try:
import numpy as np
except ImportError:
from pytest import skip
skip('Numpy not available', allow_module_level=True)
import random
import networkx as nx
from networkx.algorithms import approximation as approx
from networkx.algorithms import threshold
progress = 0
# store the random numbers after setting a global seed
np.random.seed(42)
np_rv = np.random.rand()
random.seed(42)
py_rv = random.random()
def t(f, *args, **kwds):
"""call one function and check if global RNG changed"""
global progress
progress += 1
print(progress, ",", end="")
f(*args, **kwds)
after_np_rv = np.random.rand()
# if np_rv != after_np_rv:
# print(np_rv, after_np_rv, "don't match np!")
assert np_rv == after_np_rv
np.random.seed(42)
after_py_rv = random.random()
# if py_rv != after_py_rv:
# print(py_rv, after_py_rv, "don't match py!")
assert py_rv == after_py_rv
random.seed(42)
def run_all_random_functions(seed):
n = 20
m = 10
k = l = 2
s = v = 10
p = q = p1 = p2 = p_in = p_out = 0.4
alpha = radius = theta = 0.75
sizes = (20, 20, 10)
colors = [1, 2, 3]
G = nx.barbell_graph(12, 20)
deg_sequence = in_degree_sequence = w = sequence = aseq = bseq = \
[3, 2, 1, 3, 2, 1, 3, 2, 1, 2, 1, 2, 1]
# print("starting...")
t(nx.maximal_independent_set, G, seed=seed)
t(nx.rich_club_coefficient, G, seed=seed, normalized=False)
t(nx.random_reference, G, seed=seed)
t(nx.lattice_reference, G, seed=seed)
t(nx.sigma, G, 1, 2, seed=seed)
t(nx.omega, G, 1, 2, seed=seed)
# print("out of smallworld.py")
t(nx.double_edge_swap, G, seed=seed)
# print("starting connected_double_edge_swap")
t(nx.connected_double_edge_swap, nx.complete_graph(9), seed=seed)
# print("ending connected_double_edge_swap")
t(nx.random_layout, G, seed=seed)
t(nx.fruchterman_reingold_layout, G, seed=seed)
t(nx.algebraic_connectivity, G, seed=seed)
t(nx.fiedler_vector, G, seed=seed)
t(nx.spectral_ordering, G, seed=seed)
# print('starting average_clustering')
t(approx.average_clustering, G, seed=seed)
t(nx.betweenness_centrality, G, seed=seed)
t(nx.edge_betweenness_centrality, G, seed=seed)
t(nx.edge_betweenness, G, seed=seed)
t(nx.approximate_current_flow_betweenness_centrality, G, seed=seed)
# print("kernighan")
t(nx.algorithms.community.kernighan_lin_bisection, G, seed=seed)
# nx.algorithms.community.asyn_lpa_communities(G, seed=seed)
t(nx.algorithms.tree.greedy_branching, G, seed=seed)
t(nx.algorithms.tree.Edmonds, G, seed=seed)
# print('done with graph argument functions')
t(nx.spectral_graph_forge, G, alpha, seed=seed)
t(nx.algorithms.community.asyn_fluidc, G, k, max_iter=1, seed=seed)
t(nx.algorithms.connectivity.edge_augmentation.greedy_k_edge_augmentation,
G, k, seed=seed)
t(nx.algorithms.coloring.strategy_random_sequential, G, colors, seed=seed)
cs = ['d', 'i', 'i', 'd', 'd', 'i']
t(threshold.swap_d, cs, seed=seed)
t(nx.configuration_model, deg_sequence, seed=seed)
t(nx.directed_configuration_model,
in_degree_sequence, in_degree_sequence, seed=seed)
t(nx.expected_degree_graph, w, seed=seed)
t(nx.random_degree_sequence_graph, sequence, seed=seed)
joint_degrees = {1: {4: 1},
2: {2: 2, 3: 2, 4: 2},
3: {2: 2, 4: 1},
4: {1: 1, 2: 2, 3: 1}}
t(nx.joint_degree_graph, joint_degrees, seed=seed)
joint_degree_sequence = [(1, 0), (1, 0), (1, 0), (2, 0), (1, 0), (2, 1),
(0, 1), (0, 1)]
t(nx.random_clustered_graph, joint_degree_sequence, seed=seed)
constructor = [(3, 3, .5), (10, 10, .7)]
t(nx.random_shell_graph, constructor, seed=seed)
mapping = {1: 0.4, 2: 0.3, 3: 0.3}
t(nx.utils.random_weighted_sample, mapping, k, seed=seed)
t(nx.utils.weighted_choice, mapping, seed=seed)
t(nx.algorithms.bipartite.configuration_model, aseq, bseq, seed=seed)
t(nx.algorithms.bipartite.preferential_attachment_graph,
aseq, p, seed=seed)
def kernel_integral(u, w, z):
return (z - w)
t(nx.random_kernel_graph, n, kernel_integral, seed=seed)
sizes = [75, 75, 300]
probs = [[0.25, 0.05, 0.02],
[0.05, 0.35, 0.07],
[0.02, 0.07, 0.40]]
t(nx.stochastic_block_model, sizes, probs, seed=seed)
t(nx.random_partition_graph, sizes, p_in, p_out, seed=seed)
# print("starting generator functions")
t(threshold.random_threshold_sequence, n, p, seed=seed)
t(nx.tournament.random_tournament, n, seed=seed)
t(nx.relaxed_caveman_graph, l, k, p, seed=seed)
t(nx.planted_partition_graph, l, k, p_in, p_out, seed=seed)
t(nx.gaussian_random_partition_graph, n, s, v, p_in, p_out, seed=seed)
t(nx.gn_graph, n, seed=seed)
t(nx.gnr_graph, n, p, seed=seed)
t(nx.gnc_graph, n, seed=seed)
t(nx.scale_free_graph, n, seed=seed)
t(nx.directed.random_uniform_k_out_graph, n, k, seed=seed)
t(nx.random_k_out_graph, n, k, alpha, seed=seed)
N = 1000
t(nx.partial_duplication_graph, N, n, p, q, seed=seed)
t(nx.duplication_divergence_graph, n, p, seed=seed)
t(nx.random_geometric_graph, n, radius, seed=seed)
t(nx.soft_random_geometric_graph, n, radius, seed=seed)
t(nx.geographical_threshold_graph, n, theta, seed=seed)
t(nx.waxman_graph, n, seed=seed)
t(nx.navigable_small_world_graph, n, seed=seed)
t(nx.thresholded_random_geometric_graph, n, radius, theta, seed=seed)
t(nx.uniform_random_intersection_graph, n, m, p, seed=seed)
t(nx.k_random_intersection_graph, n, m, k, seed=seed)
t(nx.general_random_intersection_graph, n, 2, [0.1, 0.5], seed=seed)
t(nx.fast_gnp_random_graph, n, p, seed=seed)
t(nx.gnp_random_graph, n, p, seed=seed)
t(nx.dense_gnm_random_graph, n, m, seed=seed)
t(nx.gnm_random_graph, n, m, seed=seed)
t(nx.newman_watts_strogatz_graph, n, k, p, seed=seed)
t(nx.watts_strogatz_graph, n, k, p, seed=seed)
t(nx.connected_watts_strogatz_graph, n, k, p, seed=seed)
t(nx.random_regular_graph, 3, n, seed=seed)
t(nx.barabasi_albert_graph, n, m, seed=seed)
t(nx.extended_barabasi_albert_graph, n, m, p, q, seed=seed)
t(nx.powerlaw_cluster_graph, n, m, p, seed=seed)
t(nx.random_lobster, n, p1, p2, seed=seed)
t(nx.random_powerlaw_tree, n, seed=seed, tries=5000)
t(nx.random_powerlaw_tree_sequence, 10, seed=seed, tries=5000)
t(nx.random_tree, n, seed=seed)
t(nx.utils.powerlaw_sequence, n, seed=seed)
t(nx.utils.zipf_rv, 2.3, seed=seed)
cdist = [.2, .4, .5, .7, .9, 1.0]
t(nx.utils.discrete_sequence, n, cdistribution=cdist, seed=seed)
t(nx.algorithms.bipartite.random_graph, n, m, p, seed=seed)
t(nx.algorithms.bipartite.gnmk_random_graph, n, m, k, seed=seed)
LFR = nx.generators.LFR_benchmark_graph
t(LFR, 25, 3, 1.5, 0.1, average_degree=3, min_community=10,
seed=seed, max_community=20)
t(nx.random_internet_as_graph, n, seed=seed)
# print("done")
# choose to test an integer seed, or whether a single RNG can be everywhere
# np_rng = np.random.RandomState(14)
# seed = np_rng
# seed = 14
# print("NetworkX Version:", nx.__version__)
def test_rng_interface():
global progress
# try different kinds of seeds
for seed in [14, np.random.RandomState(14)]:
np.random.seed(42)
random.seed(42)
run_all_random_functions(seed)
progress = 0
# check that both global RNGs are unaffected
after_np_rv = np.random.rand()
# if np_rv != after_np_rv:
# print(np_rv, after_np_rv, "don't match np!")
assert np_rv == after_np_rv
after_py_rv = random.random()
# if py_rv != after_py_rv:
# print(py_rv, after_py_rv, "don't match py!")
assert py_rv == after_py_rv
# print("\nDone testing seed:", seed)
# test_rng_interface()