#!/usr/bin/env python3 # -*- coding: utf-8 -*- """ Tests for ISMAGS isomorphism algorithm. """ import pytest import networkx as nx from networkx.algorithms import isomorphism as iso def _matches_to_sets(matches): """ Helper function to facilitate comparing collections of dictionaries in which order does not matter. """ return set(map(lambda m: frozenset(m.items()), matches)) class TestSelfIsomorphism(object): data = [ ( [(0, dict(name='a')), (1, dict(name='a')), (2, dict(name='b')), (3, dict(name='b')), (4, dict(name='a')), (5, dict(name='a'))], [(0, 1), (1, 2), (2, 3), (3, 4), (4, 5)] ), ( range(1, 5), [(1, 2), (2, 4), (4, 3), (3, 1)] ), ( [], [(0, 1), (1, 2), (2, 3), (3, 4), (4, 5), (5, 0), (0, 6), (6, 7), (2, 8), (8, 9), (4, 10), (10, 11)] ), ( [], [(0, 1), (1, 2), (1, 4), (2, 3), (3, 5), (3, 6)] ), ] def test_self_isomorphism(self): """ For some small, symmetric graphs, make sure that 1) they are isomorphic to themselves, and 2) that only the identity mapping is found. """ for node_data, edge_data in self.data: graph = nx.Graph() graph.add_nodes_from(node_data) graph.add_edges_from(edge_data) ismags = iso.ISMAGS(graph, graph, node_match=iso.categorical_node_match('name', None)) assert ismags.is_isomorphic() assert ismags.subgraph_is_isomorphic() assert (list(ismags.subgraph_isomorphisms_iter(symmetry=True)) == [{n: n for n in graph.nodes}]) def test_edgecase_self_isomorphism(self): """ This edgecase is one of the cases in which it is hard to find all symmetry elements. """ graph = nx.Graph() nx.add_path(graph, range(5)) graph.add_edges_from([(2, 5), (5, 6)]) ismags = iso.ISMAGS(graph, graph) ismags_answer = list(ismags.find_isomorphisms(True)) assert ismags_answer == [{n: n for n in graph.nodes}] graph = nx.relabel_nodes(graph, {0: 0, 1: 1, 2: 2, 3: 3, 4: 6, 5: 4, 6: 5}) ismags = iso.ISMAGS(graph, graph) ismags_answer = list(ismags.find_isomorphisms(True)) assert ismags_answer == [{n: n for n in graph.nodes}] @pytest.mark.skip() def test_directed_self_isomorphism(self): """ For some small, directed, symmetric graphs, make sure that 1) they are isomorphic to themselves, and 2) that only the identity mapping is found. """ for node_data, edge_data in self.data: graph = nx.Graph() graph.add_nodes_from(node_data) graph.add_edges_from(edge_data) ismags = iso.ISMAGS(graph, graph, node_match=iso.categorical_node_match('name', None)) assert ismags.is_isomorphic() assert ismags.subgraph_is_isomorphic() assert (list(ismags.subgraph_isomorphisms_iter(symmetry=True)) == [{n: n for n in graph.nodes}]) class TestSubgraphIsomorphism(object): def test_isomorphism(self): g1 = nx.Graph() nx.add_cycle(g1, range(4)) g2 = nx.Graph() nx.add_cycle(g2, range(4)) g2.add_edges_from([(n, m) for n, m in zip(g2, range(4, 8))]) ismags = iso.ISMAGS(g2, g1) assert (list(ismags.subgraph_isomorphisms_iter(symmetry=True)) == [{n: n for n in g1.nodes}]) def test_isomorphism2(self): g1 = nx.Graph() nx.add_path(g1, range(3)) g2 = g1.copy() g2.add_edge(1, 3) ismags = iso.ISMAGS(g2, g1) matches = ismags.subgraph_isomorphisms_iter(symmetry=True) expected_symmetric = [{0: 0, 1: 1, 2: 2}, {0: 0, 1: 1, 3: 2}, {2: 0, 1: 1, 3: 2}] assert (_matches_to_sets(matches) == _matches_to_sets(expected_symmetric)) matches = ismags.subgraph_isomorphisms_iter(symmetry=False) expected_asymmetric = [{0: 2, 1: 1, 2: 0}, {0: 2, 1: 1, 3: 0}, {2: 2, 1: 1, 3: 0}] assert (_matches_to_sets(matches) == _matches_to_sets(expected_symmetric + expected_asymmetric)) def test_labeled_nodes(self): g1 = nx.Graph() nx.add_cycle(g1, range(3)) g1.nodes[1]['attr'] = True g2 = g1.copy() g2.add_edge(1, 3) ismags = iso.ISMAGS(g2, g1, node_match=lambda x, y: x == y) matches = ismags.subgraph_isomorphisms_iter(symmetry=True) expected_symmetric = [{0: 0, 1: 1, 2: 2}] assert (_matches_to_sets(matches) == _matches_to_sets(expected_symmetric)) matches = ismags.subgraph_isomorphisms_iter(symmetry=False) expected_asymmetric = [{0: 2, 1: 1, 2: 0}] assert (_matches_to_sets(matches) == _matches_to_sets(expected_symmetric + expected_asymmetric)) def test_labeled_edges(self): g1 = nx.Graph() nx.add_cycle(g1, range(3)) g1.edges[1, 2]['attr'] = True g2 = g1.copy() g2.add_edge(1, 3) ismags = iso.ISMAGS(g2, g1, edge_match=lambda x, y: x == y) matches = ismags.subgraph_isomorphisms_iter(symmetry=True) expected_symmetric = [{0: 0, 1: 1, 2: 2}] assert (_matches_to_sets(matches) == _matches_to_sets(expected_symmetric)) matches = ismags.subgraph_isomorphisms_iter(symmetry=False) expected_asymmetric = [{1: 2, 0: 0, 2: 1}] assert (_matches_to_sets(matches) == _matches_to_sets(expected_symmetric + expected_asymmetric)) class TestWikipediaExample(object): # Nodes 'a', 'b', 'c' and 'd' form a column. # Nodes 'g', 'h', 'i' and 'j' form a column. g1edges = [['a', 'g'], ['a', 'h'], ['a', 'i'], ['b', 'g'], ['b', 'h'], ['b', 'j'], ['c', 'g'], ['c', 'i'], ['c', 'j'], ['d', 'h'], ['d', 'i'], ['d', 'j']] # Nodes 1,2,3,4 form the clockwise corners of a large square. # Nodes 5,6,7,8 form the clockwise corners of a small square g2edges = [[1, 2], [2, 3], [3, 4], [4, 1], [5, 6], [6, 7], [7, 8], [8, 5], [1, 5], [2, 6], [3, 7], [4, 8]] def test_graph(self): g1 = nx.Graph() g2 = nx.Graph() g1.add_edges_from(self.g1edges) g2.add_edges_from(self.g2edges) gm = iso.ISMAGS(g1, g2) assert gm.is_isomorphic() class TestLargestCommonSubgraph(object): def test_mcis(self): # Example graphs from DOI: 10.1002/spe.588 graph1 = nx.Graph() graph1.add_edges_from([(1, 2), (2, 3), (2, 4), (3, 4), (4, 5)]) graph1.nodes[1]['color'] = 0 graph2 = nx.Graph() graph2.add_edges_from([(1, 2), (2, 3), (2, 4), (3, 4), (3, 5), (5, 6), (5, 7), (6, 7)]) graph2.nodes[1]['color'] = 1 graph2.nodes[6]['color'] = 2 graph2.nodes[7]['color'] = 2 ismags = iso.ISMAGS(graph1, graph2, node_match=iso.categorical_node_match('color', None)) assert list(ismags.subgraph_isomorphisms_iter(True)) == [] assert list(ismags.subgraph_isomorphisms_iter(False)) == [] found_mcis = _matches_to_sets(ismags.largest_common_subgraph()) expected = _matches_to_sets([{2: 2, 3: 4, 4: 3, 5: 5}, {2: 4, 3: 2, 4: 3, 5: 5}]) assert expected == found_mcis ismags = iso.ISMAGS(graph2, graph1, node_match=iso.categorical_node_match('color', None)) assert list(ismags.subgraph_isomorphisms_iter(True)) == [] assert list(ismags.subgraph_isomorphisms_iter(False)) == [] found_mcis = _matches_to_sets(ismags.largest_common_subgraph()) # Same answer, but reversed. expected = _matches_to_sets([{2: 2, 3: 4, 4: 3, 5: 5}, {4: 2, 2: 3, 3: 4, 5: 5}]) assert expected == found_mcis def test_symmetry_mcis(self): graph1 = nx.Graph() nx.add_path(graph1, range(4)) graph2 = nx.Graph() nx.add_path(graph2, range(3)) graph2.add_edge(1, 3) # Only the symmetry of graph2 is taken into account here. ismags1 = iso.ISMAGS(graph1, graph2, node_match=iso.categorical_node_match('color', None)) assert list(ismags1.subgraph_isomorphisms_iter(True)) == [] found_mcis = _matches_to_sets(ismags1.largest_common_subgraph()) expected = _matches_to_sets([{0: 0, 1: 1, 2: 2}, {1: 0, 3: 2, 2: 1}]) assert expected == found_mcis # Only the symmetry of graph1 is taken into account here. ismags2 = iso.ISMAGS(graph2, graph1, node_match=iso.categorical_node_match('color', None)) assert list(ismags2.subgraph_isomorphisms_iter(True)) == [] found_mcis = _matches_to_sets(ismags2.largest_common_subgraph()) expected = _matches_to_sets([{3: 2, 0: 0, 1: 1}, {2: 0, 0: 2, 1: 1}, {3: 0, 0: 2, 1: 1}, {3: 0, 1: 1, 2: 2}, {0: 0, 1: 1, 2: 2}, {2: 0, 3: 2, 1: 1}]) assert expected == found_mcis found_mcis1 = _matches_to_sets(ismags1.largest_common_subgraph(False)) found_mcis2 = ismags2.largest_common_subgraph(False) found_mcis2 = [{v: k for k, v in d.items()} for d in found_mcis2] found_mcis2 = _matches_to_sets(found_mcis2) expected = _matches_to_sets([{3: 2, 1: 3, 2: 1}, {2: 0, 0: 2, 1: 1}, {1: 2, 3: 3, 2: 1}, {3: 0, 1: 3, 2: 1}, {0: 2, 2: 3, 1: 1}, {3: 0, 1: 2, 2: 1}, {2: 0, 0: 3, 1: 1}, {0: 0, 2: 3, 1: 1}, {1: 0, 3: 3, 2: 1}, {1: 0, 3: 2, 2: 1}, {0: 3, 1: 1, 2: 2}, {0: 0, 1: 1, 2: 2}]) assert expected == found_mcis1 assert expected == found_mcis2