# -*- coding: utf-8 -*- import math import networkx as nx from networkx.testing import almost_equal import pytest class TestKatzCentrality(object): def test_K5(self): """Katz centrality: K5""" G = nx.complete_graph(5) alpha = 0.1 b = nx.katz_centrality(G, alpha) v = math.sqrt(1 / 5.0) b_answer = dict.fromkeys(G, v) for n in sorted(G): assert almost_equal(b[n], b_answer[n]) nstart = dict([(n, 1) for n in G]) b = nx.katz_centrality(G, alpha, nstart=nstart) for n in sorted(G): assert almost_equal(b[n], b_answer[n]) def test_P3(self): """Katz centrality: P3""" alpha = 0.1 G = nx.path_graph(3) b_answer = {0: 0.5598852584152165, 1: 0.6107839182711449, 2: 0.5598852584152162} b = nx.katz_centrality(G, alpha) for n in sorted(G): assert almost_equal(b[n], b_answer[n], places=4) def test_maxiter(self): with pytest.raises(nx.PowerIterationFailedConvergence): alpha = 0.1 G = nx.path_graph(3) max_iter = 0 try: b = nx.katz_centrality(G, alpha, max_iter=max_iter) except nx.NetworkXError as e: assert str(max_iter) in e.args[0], "max_iter value not in error msg" raise # So that the decorater sees the exception. def test_beta_as_scalar(self): alpha = 0.1 beta = 0.1 b_answer = {0: 0.5598852584152165, 1: 0.6107839182711449, 2: 0.5598852584152162} G = nx.path_graph(3) b = nx.katz_centrality(G, alpha, beta) for n in sorted(G): assert almost_equal(b[n], b_answer[n], places=4) def test_beta_as_dict(self): alpha = 0.1 beta = {0: 1.0, 1: 1.0, 2: 1.0} b_answer = {0: 0.5598852584152165, 1: 0.6107839182711449, 2: 0.5598852584152162} G = nx.path_graph(3) b = nx.katz_centrality(G, alpha, beta) for n in sorted(G): assert almost_equal(b[n], b_answer[n], places=4) def test_multiple_alpha(self): alpha_list = [0.1, 0.2, 0.3, 0.4, 0.5, 0.6] for alpha in alpha_list: b_answer = {0.1: {0: 0.5598852584152165, 1: 0.6107839182711449, 2: 0.5598852584152162}, 0.2: {0: 0.5454545454545454, 1: 0.6363636363636365, 2: 0.5454545454545454}, 0.3: {0: 0.5333964609104419, 1: 0.6564879518897746, 2: 0.5333964609104419}, 0.4: {0: 0.5232045649263551, 1: 0.6726915834767423, 2: 0.5232045649263551}, 0.5: {0: 0.5144957746691622, 1: 0.6859943117075809, 2: 0.5144957746691622}, 0.6: {0: 0.5069794004195823, 1: 0.6970966755769258, 2: 0.5069794004195823}} G = nx.path_graph(3) b = nx.katz_centrality(G, alpha) for n in sorted(G): assert almost_equal(b[n], b_answer[alpha][n], places=4) def test_multigraph(self): with pytest.raises(nx.NetworkXException): e = nx.katz_centrality(nx.MultiGraph(), 0.1) def test_empty(self): e = nx.katz_centrality(nx.Graph(), 0.1) assert e == {} def test_bad_beta(self): with pytest.raises(nx.NetworkXException): G = nx.Graph([(0, 1)]) beta = {0: 77} e = nx.katz_centrality(G, 0.1, beta=beta) def test_bad_beta_numbe(self): with pytest.raises(nx.NetworkXException): G = nx.Graph([(0, 1)]) e = nx.katz_centrality(G, 0.1, beta='foo') class TestKatzCentralityNumpy(object): @classmethod def setup_class(cls): global np np = pytest.importorskip('numpy') scipy = pytest.importorskip('scipy') def test_K5(self): """Katz centrality: K5""" G = nx.complete_graph(5) alpha = 0.1 b = nx.katz_centrality(G, alpha) v = math.sqrt(1 / 5.0) b_answer = dict.fromkeys(G, v) for n in sorted(G): assert almost_equal(b[n], b_answer[n]) nstart = dict([(n, 1) for n in G]) b = nx.eigenvector_centrality_numpy(G) for n in sorted(G): assert almost_equal(b[n], b_answer[n], places=3) def test_P3(self): """Katz centrality: P3""" alpha = 0.1 G = nx.path_graph(3) b_answer = {0: 0.5598852584152165, 1: 0.6107839182711449, 2: 0.5598852584152162} b = nx.katz_centrality_numpy(G, alpha) for n in sorted(G): assert almost_equal(b[n], b_answer[n], places=4) def test_beta_as_scalar(self): alpha = 0.1 beta = 0.1 b_answer = {0: 0.5598852584152165, 1: 0.6107839182711449, 2: 0.5598852584152162} G = nx.path_graph(3) b = nx.katz_centrality_numpy(G, alpha, beta) for n in sorted(G): assert almost_equal(b[n], b_answer[n], places=4) def test_beta_as_dict(self): alpha = 0.1 beta = {0: 1.0, 1: 1.0, 2: 1.0} b_answer = {0: 0.5598852584152165, 1: 0.6107839182711449, 2: 0.5598852584152162} G = nx.path_graph(3) b = nx.katz_centrality_numpy(G, alpha, beta) for n in sorted(G): assert almost_equal(b[n], b_answer[n], places=4) def test_multiple_alpha(self): alpha_list = [0.1, 0.2, 0.3, 0.4, 0.5, 0.6] for alpha in alpha_list: b_answer = {0.1: {0: 0.5598852584152165, 1: 0.6107839182711449, 2: 0.5598852584152162}, 0.2: {0: 0.5454545454545454, 1: 0.6363636363636365, 2: 0.5454545454545454}, 0.3: {0: 0.5333964609104419, 1: 0.6564879518897746, 2: 0.5333964609104419}, 0.4: {0: 0.5232045649263551, 1: 0.6726915834767423, 2: 0.5232045649263551}, 0.5: {0: 0.5144957746691622, 1: 0.6859943117075809, 2: 0.5144957746691622}, 0.6: {0: 0.5069794004195823, 1: 0.6970966755769258, 2: 0.5069794004195823}} G = nx.path_graph(3) b = nx.katz_centrality_numpy(G, alpha) for n in sorted(G): assert almost_equal(b[n], b_answer[alpha][n], places=4) def test_multigraph(self): with pytest.raises(nx.NetworkXException): e = nx.katz_centrality(nx.MultiGraph(), 0.1) def test_empty(self): e = nx.katz_centrality(nx.Graph(), 0.1) assert e == {} def test_bad_beta(self): with pytest.raises(nx.NetworkXException): G = nx.Graph([(0, 1)]) beta = {0: 77} e = nx.katz_centrality_numpy(G, 0.1, beta=beta) def test_bad_beta_numbe(self): with pytest.raises(nx.NetworkXException): G = nx.Graph([(0, 1)]) e = nx.katz_centrality_numpy(G, 0.1, beta='foo') def test_K5_unweighted(self): """Katz centrality: K5""" G = nx.complete_graph(5) alpha = 0.1 b = nx.katz_centrality(G, alpha, weight=None) v = math.sqrt(1 / 5.0) b_answer = dict.fromkeys(G, v) for n in sorted(G): assert almost_equal(b[n], b_answer[n]) nstart = dict([(n, 1) for n in G]) b = nx.eigenvector_centrality_numpy(G, weight=None) for n in sorted(G): assert almost_equal(b[n], b_answer[n], places=3) def test_P3_unweighted(self): """Katz centrality: P3""" alpha = 0.1 G = nx.path_graph(3) b_answer = {0: 0.5598852584152165, 1: 0.6107839182711449, 2: 0.5598852584152162} b = nx.katz_centrality_numpy(G, alpha, weight=None) for n in sorted(G): assert almost_equal(b[n], b_answer[n], places=4) class TestKatzCentralityDirected(object): @classmethod def setup_class(cls): G = nx.DiGraph() edges = [(1, 2), (1, 3), (2, 4), (3, 2), (3, 5), (4, 2), (4, 5), (4, 6), (5, 6), (5, 7), (5, 8), (6, 8), (7, 1), (7, 5), (7, 8), (8, 6), (8, 7)] G.add_edges_from(edges, weight=2.0) cls.G = G.reverse() cls.G.alpha = 0.1 cls.G.evc = [ 0.3289589783189635, 0.2832077296243516, 0.3425906003685471, 0.3970420865198392, 0.41074871061646284, 0.272257430756461, 0.4201989685435462, 0.34229059218038554, ] H = nx.DiGraph(edges) cls.H = G.reverse() cls.H.alpha = 0.1 cls.H.evc = [ 0.3289589783189635, 0.2832077296243516, 0.3425906003685471, 0.3970420865198392, 0.41074871061646284, 0.272257430756461, 0.4201989685435462, 0.34229059218038554, ] def test_katz_centrality_weighted(self): G = self.G alpha = self.G.alpha p = nx.katz_centrality(G, alpha, weight='weight') for (a, b) in zip(list(p.values()), self.G.evc): assert almost_equal(a, b) def test_katz_centrality_unweighted(self): H = self.H alpha = self.H.alpha p = nx.katz_centrality(H, alpha, weight='weight') for (a, b) in zip(list(p.values()), self.H.evc): assert almost_equal(a, b) class TestKatzCentralityDirectedNumpy(TestKatzCentralityDirected): @classmethod def setup_class(cls): global np np = pytest.importorskip('numpy') scipy = pytest.importorskip('scipy') def test_katz_centrality_weighted(self): G = self.G alpha = self.G.alpha p = nx.katz_centrality_numpy(G, alpha, weight='weight') for (a, b) in zip(list(p.values()), self.G.evc): assert almost_equal(a, b) def test_katz_centrality_unweighted(self): H = self.H alpha = self.H.alpha p = nx.katz_centrality_numpy(H, alpha, weight='weight') for (a, b) in zip(list(p.values()), self.H.evc): assert almost_equal(a, b) class TestKatzEigenvectorVKatz(object): @classmethod def setup_class(cls): global np global eigvals np = pytest.importorskip('numpy') scipy = pytest.importorskip('scipy') from numpy.linalg import eigvals def test_eigenvector_v_katz_random(self): G = nx.gnp_random_graph(10, 0.5, seed=1234) l = float(max(eigvals(nx.adjacency_matrix(G).todense()))) e = nx.eigenvector_centrality_numpy(G) k = nx.katz_centrality_numpy(G, 1.0 / l) for n in G: assert almost_equal(e[n], k[n])