feat: add option to disable OCR (#768)

fixes #344
refs #767

.github/workflows/build-deploy.yml

@@ -0,0 +1,84 @@
+name: Maven CI/CD
+
+on:
+  push:
+    branches: [master]
+    tags: [v*]
+  workflow_dispatch:
+
+jobs:
+  build_and_publish:
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v2
+      - name: Set up JDK 11
+        uses: actions/setup-java@v2
+        with:
+          java-version: "11"
+          distribution: "temurin"
+          cache: maven
+      - name: Install test dependencies
+        run: sudo apt-get update && sudo apt-get -y -q --no-install-recommends install ffmpeg mediainfo tesseract-ocr tesseract-ocr-deu
+      - name: Build with Maven
+        run: mvn --batch-mode -Pprod clean install
+      - name: Upload war artifact
+        uses: actions/upload-artifact@v2
+        with:
+          name: docs-web-ci.war
+          path: docs-web/target/docs*.war
+
+  build_docker_image:
+    name: Publish to Docker Hub
+    runs-on: ubuntu-latest
+    needs: [build_and_publish]
+
+    steps:
+      - 
+        name: Checkout
+        uses: actions/checkout@v2
+      - 
+        name: Download war artifact
+        uses: actions/download-artifact@v2
+        with:
+          name: docs-web-ci.war
+          path: docs-web/target
+      - 
+        name: Setup up Docker Buildx
+        uses: docker/setup-buildx-action@v1
+      - 
+        name: Login to DockerHub
+        if: github.event_name != 'pull_request'
+        uses: docker/login-action@v1
+        with:
+          username: ${{ secrets.DOCKERHUB_USERNAME }}
+          password: ${{ secrets.DOCKERHUB_TOKEN }}
+      - 
+        name: Populate Docker metadata
+        id: metadata
+        uses: docker/metadata-action@v3
+        with:
+          images: sismics/docs
+          flavor: |
+            latest=false
+          tags: |
+            type=ref,event=tag
+            type=raw,value=latest,enable=${{ github.ref_type != 'tag' }}
+          labels: |
+            org.opencontainers.image.title = Teedy
+            org.opencontainers.image.description = Teedy is an open source, lightweight document management system for individuals and businesses.
+            org.opencontainers.image.created = ${{ github.event_created_at }}
+            org.opencontainers.image.author = Sismics
+            org.opencontainers.image.url = https://teedy.io/
+            org.opencontainers.image.vendor = Sismics
+            org.opencontainers.image.license = GPLv2
+            org.opencontainers.image.version = ${{ github.event_head_commit.id }}
+      - 
+        name: Build and push
+        id: docker_build
+        uses: docker/build-push-action@v2
+        with:
+          context: .
+          push: ${{ github.event_name != 'pull_request' }}
+          tags: ${{ steps.metadata.outputs.tags }}
+          labels: ${{ steps.metadata.outputs.labels }}

.gitignore

@@ -11,6 +11,11 @@
 *.iml
 node_modules
 import_test
-docs-importer-linux
-docs-importer-macos
-docs-importer-win.exe
+teedy-importer-linux
+teedy-importer-macos
+teedy-importer-win.exe
+docs/*
+!docs/.gitkeep
+
+#macos
+.DS_Store

.travis.yml

@@ -1,26 +0,0 @@
-sudo: required
-dist: trusty
-language: java
-before_install:
-  - sudo add-apt-repository -y ppa:mc3man/trusty-media
-  - sudo apt-get -qq update
-  - sudo apt-get -y -q install ffmpeg mediainfo tesseract-ocr tesseract-ocr-fra tesseract-ocr-ita tesseract-ocr-kor tesseract-ocr-rus tesseract-ocr-ukr tesseract-ocr-spa tesseract-ocr-ara tesseract-ocr-hin tesseract-ocr-deu tesseract-ocr-pol tesseract-ocr-jpn tesseract-ocr-por tesseract-ocr-tha tesseract-ocr-jpn tesseract-ocr-chi-sim tesseract-ocr-chi-tra tesseract-ocr-nld tesseract-ocr-tur tesseract-ocr-heb tesseract-ocr-hun
-  - sudo apt-get -y -q install haveged && sudo service haveged start
-after_success:
-  - |
-    if [ "$TRAVIS_PULL_REQUEST" == "false" ]; then
-      mvn -Pprod -DskipTests clean install
-      docker login -u $DOCKER_USER -p $DOCKER_PASS
-      export REPO=sismics/docs
-      export TAG=`if [ "$TRAVIS_BRANCH" == "master" ]; then echo "latest"; else echo $TRAVIS_BRANCH ; fi`
-      docker build -f Dockerfile -t $REPO:$COMMIT .
-      docker tag $REPO:$COMMIT $REPO:$TAG
-      docker tag $REPO:$COMMIT $REPO:travis-$TRAVIS_BUILD_NUMBER
-      docker push $REPO
-    fi
-env:
-  global:
-  - secure: LRGpjWORb0qy6VuypZjTAfA8uRHlFUMTwb77cenS9PPRBxuSnctC531asS9Xg3DqC5nsRxBBprgfCKotn5S8nBSD1ceHh84NASyzLSBft3xSMbg7f/2i7MQ+pGVwLncusBU6E/drnMFwZBleo+9M8Tf96axY5zuUp90MUTpSgt0=
-  - secure: bCDDR6+I7PmSkuTYZv1HF/z98ANX/SFEESUCqxVmV5Gs0zFC0vQXaPJQ2xaJNRop1HZBFMZLeMMPleb0iOs985smpvK2F6Rbop9Tu+Vyo0uKqv9tbZ7F8Nfgnv9suHKZlL84FNeUQZJX6vsFIYPEJ/r7K5P/M0PdUy++fEwxEhU=
-  - secure: ewXnzbkgCIHpDWtaWGMa1OYZJ/ki99zcIl4jcDPIC0eB3njX/WgfcC6i0Ke9mLqDqwXarWJ6helm22sNh+xtQiz6isfBtBX+novfRt9AANrBe3koCMUemMDy7oh5VflBaFNP0DVb8LSCnwf6dx6ZB5E9EB8knvk40quc/cXpGjY=
-  - COMMIT=${TRAVIS_COMMIT::8}

Dockerfile

@@ -1,11 +1,75 @@
-FROM sismics/ubuntu-jetty:9.4.12
-MAINTAINER b.gamard@sismics.com
+FROM ubuntu:22.04
+LABEL maintainer="b.gamard@sismics.com"
 
-RUN apt-get update && apt-get -y -q install ffmpeg mediainfo tesseract-ocr tesseract-ocr-fra tesseract-ocr-ita tesseract-ocr-kor tesseract-ocr-rus tesseract-ocr-ukr tesseract-ocr-spa tesseract-ocr-ara tesseract-ocr-hin tesseract-ocr-deu tesseract-ocr-pol tesseract-ocr-jpn tesseract-ocr-por tesseract-ocr-tha tesseract-ocr-jpn tesseract-ocr-chi-sim tesseract-ocr-chi-tra tesseract-ocr-nld tesseract-ocr-tur tesseract-ocr-heb tesseract-ocr-hun && \
-    apt-get clean && rm -rf /var/lib/apt/lists/*
+# Run Debian in non interactive mode
+ENV DEBIAN_FRONTEND noninteractive
 
-# Remove the embedded javax.mail jar from Jetty
-RUN rm -f /opt/jetty/lib/mail/javax.mail.glassfish-*.jar
+# Configure env
+ENV LANG C.UTF-8
+ENV LC_ALL C.UTF-8
+ENV JAVA_HOME /usr/lib/jvm/java-11-openjdk-amd64/
+ENV JAVA_OPTIONS -Dfile.encoding=UTF-8 -Xmx1g
+ENV JETTY_VERSION 11.0.20
+ENV JETTY_HOME /opt/jetty
 
-ADD docs.xml /opt/jetty/webapps/docs.xml
-ADD docs-web/target/docs-web-*.war /opt/jetty/webapps/docs.war
+# Install packages
+RUN apt-get update && \
+    apt-get -y -q --no-install-recommends install \
+    vim less procps unzip wget tzdata openjdk-11-jdk \
+    ffmpeg \
+    mediainfo \
+    tesseract-ocr \
+    tesseract-ocr-ara \
+    tesseract-ocr-ces \
+    tesseract-ocr-chi-sim \
+    tesseract-ocr-chi-tra \
+    tesseract-ocr-dan \
+    tesseract-ocr-deu \
+    tesseract-ocr-fin \
+    tesseract-ocr-fra \
+    tesseract-ocr-heb \
+    tesseract-ocr-hin \
+    tesseract-ocr-hun \
+    tesseract-ocr-ita \
+    tesseract-ocr-jpn \
+    tesseract-ocr-kor \
+    tesseract-ocr-lav \
+    tesseract-ocr-nld \
+    tesseract-ocr-nor \
+    tesseract-ocr-pol \
+    tesseract-ocr-por \
+    tesseract-ocr-rus \
+    tesseract-ocr-spa \
+    tesseract-ocr-swe \
+    tesseract-ocr-tha \
+    tesseract-ocr-tur \
+    tesseract-ocr-ukr \
+    tesseract-ocr-vie \
+    tesseract-ocr-sqi \
+    && apt-get clean && \
+    rm -rf /var/lib/apt/lists/*
+RUN dpkg-reconfigure -f noninteractive tzdata
+
+# Install Jetty
+RUN wget -nv -O /tmp/jetty.tar.gz \
+    "https://repo1.maven.org/maven2/org/eclipse/jetty/jetty-home/${JETTY_VERSION}/jetty-home-${JETTY_VERSION}.tar.gz" \
+    && tar xzf /tmp/jetty.tar.gz -C /opt \
+    && mv /opt/jetty* /opt/jetty \
+    && useradd jetty -U -s /bin/false \
+    && chown -R jetty:jetty /opt/jetty \
+    && mkdir /opt/jetty/webapps \
+    && chmod +x /opt/jetty/bin/jetty.sh
+
+EXPOSE 8080
+
+# Install app
+RUN mkdir /app && \
+    cd /app && \
+    java -jar /opt/jetty/start.jar --add-modules=server,http,webapp,deploy
+
+ADD docs.xml /app/webapps/docs.xml
+ADD docs-web/target/docs-web-*.war /app/webapps/docs.war
+
+WORKDIR /app
+
+CMD ["java", "-jar", "/opt/jetty/start.jar"]

README.md

@@ -2,9 +2,8 @@
   <img src="https://teedy.io/img/github-title.png" alt="Teedy" width=500 />
 </h3>
 
-[![Twitter: @teedyio](https://img.shields.io/badge/contact-@teedyio-blue.svg?style=flat)](https://twitter.com/teedyio)
 [![License: GPL v2](https://img.shields.io/badge/License-GPL%20v2-blue.svg)](https://www.gnu.org/licenses/old-licenses/gpl-2.0.en.html)
-[![Build Status](https://secure.travis-ci.org/sismics/docs.png)](http://travis-ci.org/sismics/docs)
+[![Maven CI/CD](https://github.com/sismics/docs/actions/workflows/build-deploy.yml/badge.svg)](https://github.com/sismics/docs/actions/workflows/build-deploy.yml)
 
 Teedy is an open source, lightweight document management system for individuals and businesses.
 
@@ -16,19 +15,19 @@ Teedy is an open source, lightweight document management system for individuals
 
 ![New!](https://teedy.io/img/laptop-demo.png?20180301)
 
-Demo
-----
+# Demo
 
 A demo is available at [demo.teedy.io](https://demo.teedy.io)
+
 - Guest login is enabled with read access on all documents
 - "admin" login with "admin" password
 - "demo" login with "password" password 
 
-Features
---------
+# Features
 
 - Responsive user interface
 - Optical character recognition
+- LDAP authentication ![New!](https://www.sismics.com/public/img/new.png)
 - Support image, PDF, ODT, DOCX, PPTX files
 - Video file support
 - Flexible search engine with suggestions and highlighting
@@ -54,37 +53,151 @@ Features
 - [Bulk files importer](https://github.com/sismics/docs/tree/master/docs-importer) (single or scan mode)
 - Tested to one million documents
 
-Install with Docker
--------------------
+# Install with Docker
 
-A preconfigured Docker image is available, including OCR and media conversion tools, listening on port 8080. The database is an embedded H2 database but PostgreSQL is also supported for more performance.
+A preconfigured Docker image is available, including OCR and media conversion tools, listening on port 8080. If no PostgreSQL config is provided, the database is an embedded H2 database. The H2 embedded database should only be used for testing. For production usage use the provided PostgreSQL configuration (check the Docker Compose example)
 
 **The default admin password is "admin". Don't forget to change it before going to production.**
+
 - Master branch, can be unstable. Not recommended for production use: `sismics/docs:latest`
-- Latest stable version: `sismics/docs:v1.7`
+- Latest stable version: `sismics/docs:v1.11`
 
 The data directory is `/data`. Don't forget to mount a volume on it.
 
 To build external URL, the server is expecting a `DOCS_BASE_URL` environment variable (for example https://teedy.mycompany.com)
 
-Manual installation
--------------------
+## Available environment variables
 
-#### Requirements
-- Java 8 with the [Java Cryptography Extension](http://www.oracle.com/technetwork/java/javase/downloads/jce-7-download-432124.html)
-- Tesseract 3 or 4 for OCR
+- General
+  - `DOCS_BASE_URL`: The base url used by the application. Generated url's will be using this as base.
+  - `DOCS_GLOBAL_QUOTA`: Defines the default quota applying to all users.
+  - `DOCS_BCRYPT_WORK`: Defines the work factor which is used for password hashing. The default is `10`. This value may be `4...31` including `4` and `31`. The specified value will be used for all new users and users changing their password. Be aware that setting this factor to high can heavily impact login and user creation performance.
+
+- Admin
+  - `DOCS_ADMIN_EMAIL_INIT`: Defines the e-mail-address the admin user should have upon initialization.
+  - `DOCS_ADMIN_PASSWORD_INIT`: Defines the password the admin user should have upon initialization.  Needs to be a bcrypt hash.  **Be aware that `$` within the hash have to be escaped with a second `$`.**
+
+- Database
+  - `DATABASE_URL`: The jdbc connection string to be used by `hibernate`.
+  - `DATABASE_USER`: The user which should be used for the database connection.
+  - `DATABASE_PASSWORD`: The password to be used for the database connection.
+  - `DATABASE_POOL_SIZE`: The pool size to be used for the database connection.
+
+- Language
+  - `DOCS_DEFAULT_LANGUAGE`: The language which will be used as default. Currently supported values are:
+    - `eng`, `fra`, `ita`, `deu`, `spa`, `por`, `pol`, `rus`, `ukr`, `ara`, `hin`, `chi_sim`, `chi_tra`, `jpn`, `tha`, `kor`, `nld`, `tur`, `heb`, `hun`, `fin`, `swe`, `lav`, `dan`
+
+- E-Mail
+  - `DOCS_SMTP_HOSTNAME`: Hostname of the SMTP-Server to be used by Teedy.
+  - `DOCS_SMTP_PORT`: The port which should be used.
+  - `DOCS_SMTP_USERNAME`: The username to be used.
+  - `DOCS_SMTP_PASSWORD`: The password to be used.
+
+## Examples
+
+In the following examples some passwords are exposed in cleartext. This was done in order to keep the examples simple. We strongly encourage you to use variables with an `.env` file or other means to securely store your passwords.
+
+
+### Default, using PostgreSQL
+
+```yaml
+version: '3'
+services:
+# Teedy Application
+  teedy-server:
+    image: sismics/docs:v1.11
+    restart: unless-stopped
+    ports:
+      # Map internal port to host
+      - 8080:8080
+    environment:
+      # Base url to be used
+      DOCS_BASE_URL: "https://docs.example.com"
+      # Set the admin email
+      DOCS_ADMIN_EMAIL_INIT: "admin@example.com"
+      # Set the admin password (in this example: "superSecure")
+      DOCS_ADMIN_PASSWORD_INIT: "$$2a$$05$$PcMNUbJvsk7QHFSfEIDaIOjk1VI9/E7IPjTKx.jkjPxkx2EOKSoPS"
+      # Setup the database connection. "teedy-db" is the hostname
+      # and "teedy" is the name of the database the application
+      # will connect to.
+      DATABASE_URL: "jdbc:postgresql://teedy-db:5432/teedy"
+      DATABASE_USER: "teedy_db_user"
+      DATABASE_PASSWORD: "teedy_db_password"
+      DATABASE_POOL_SIZE: "10"
+    volumes:
+      - ./docs/data:/data
+    networks:
+      - docker-internal
+      - internet
+    depends_on:
+      - teedy-db
+
+# DB for Teedy
+  teedy-db:
+    image: postgres:13.1-alpine
+    restart: unless-stopped
+    expose:
+      - 5432
+    environment:
+      POSTGRES_USER: "teedy_db_user"
+      POSTGRES_PASSWORD: "teedy_db_password"
+      POSTGRES_DB: "teedy"
+    volumes:
+      - ./docs/db:/var/lib/postgresql/data
+    networks:
+      - docker-internal
+
+networks:
+  # Network without internet access. The db does not need
+  # access to the host network.
+  docker-internal:
+    driver: bridge
+    internal: true
+  internet:
+    driver: bridge
+```
+
+### Using the internal database (only for testing)
+
+```yaml
+version: '3'
+services:
+# Teedy Application
+  teedy-server:
+    image: sismics/docs:v1.11
+    restart: unless-stopped
+    ports:
+      # Map internal port to host
+      - 8080:8080
+    environment:
+      # Base url to be used
+      DOCS_BASE_URL: "https://docs.example.com"
+      # Set the admin email
+      DOCS_ADMIN_EMAIL_INIT: "admin@example.com"
+      # Set the admin password (in this example: "superSecure")
+      DOCS_ADMIN_PASSWORD_INIT: "$$2a$$05$$PcMNUbJvsk7QHFSfEIDaIOjk1VI9/E7IPjTKx.jkjPxkx2EOKSoPS"
+    volumes:
+      - ./docs/data:/data
+```
+
+# Manual installation
+
+## Requirements
+
+- Java 11
+- Tesseract 4 for OCR
 - ffmpeg for video thumbnails
 - mediainfo for video metadata extraction
 - A webapp server like [Jetty](http://eclipse.org/jetty/) or [Tomcat](http://tomcat.apache.org/)
 
-#### Download
+## Download
+
 The latest release is downloadable here: <https://github.com/sismics/docs/releases> in WAR format. 
 **The default admin password is "admin". Don't forget to change it before going to production.**
 
-How to build Teedy from the sources
-----------------------------------
+## How to build Teedy from the sources
 
-Prerequisites: JDK 8 with JCE, Maven 3, NPM, Grunt, Tesseract 3 or 4
+Prerequisites: JDK 11, Maven 3, NPM, Grunt, Tesseract 4
 
 Teedy is organized in several Maven modules:
 
@@ -95,35 +208,39 @@ Teedy is organized in several Maven modules:
 First off, clone the repository: `git clone git://github.com/sismics/docs.git`
 or download the sources from GitHub.
 
-#### Launch the build
+### Launch the build
 
 From the root directory:
 
+```console
 mvn clean -DskipTests install
+```
 
-#### Run a stand-alone version
+### Run a stand-alone version
 
 From the `docs-web` directory:
 
+```console
 mvn jetty:run
+```
 
-#### Build a .war to deploy to your servlet container
+### Build a .war to deploy to your servlet container
 
 From the `docs-web` directory:
 
+```console
 mvn -Pprod -DskipTests clean install
+```
 
 You will get your deployable WAR in the `docs-web/target` directory.
 
-Contributing
-------------
+# Contributing
 
 All contributions are more than welcomed. Contributions may close an issue, fix a bug (reported or not reported), improve the existing code, add new feature, and so on.
 
 The `master` branch is the default and base branch for the project. It is used for development and all Pull Requests should go there.
 
-License
--------
+# License
 
 Teedy is released under the terms of the GPL license. See `COPYING` for more
 information or see <http://opensource.org/licenses/GPL-2.0>.

docker-compose.yml

@@ -0,0 +1,18 @@
+version: '3'
+services:
+# Teedy Application
+  teedy-server:
+    image: sismics/docs:v1.10
+    restart: unless-stopped
+    ports:
+      # Map internal port to host
+      - 8080:8080
+    environment:
+      # Base url to be used
+      DOCS_BASE_URL: "https://docs.example.com"
+      # Set the admin email
+      DOCS_ADMIN_EMAIL_INIT: "admin@example.com"
+      # Set the admin password (in this example: "superSecure")
+      DOCS_ADMIN_PASSWORD_INIT: "$$2a$$05$$PcMNUbJvsk7QHFSfEIDaIOjk1VI9/E7IPjTKx.jkjPxkx2EOKSoPS"
+    volumes:
+      - ./docs/data:/data

docs-android/app/src/main/java/com/sismics/docs/adapter/LanguageAdapter.java

@@ -34,6 +34,7 @@ public class LanguageAdapter extends BaseAdapter {
         languageList.add(new Language("fra", R.string.language_french, R.drawable.fra));
         languageList.add(new Language("eng", R.string.language_english, R.drawable.eng));
         languageList.add(new Language("deu", R.string.language_german, R.drawable.deu));
+        languageList.add(new Language("pol", R.string.language_polish, R.drawable.pol));
     }
 
     @Override

docs-android/app/src/main/java/com/sismics/docs/util/SearchQueryBuilder.java

@@ -39,7 +39,9 @@ public class SearchQueryBuilder {
      */
     public SearchQueryBuilder simpleSearch(String simpleSearch) {
         if (isValid(simpleSearch)) {
-            query.append(SEARCH_SEPARATOR).append(simpleSearch);
+            query.append(SEARCH_SEPARATOR)
+                    .append("simple:")
+                    .append(simpleSearch);
         }
         return this;
     }

docs-android/app/src/main/res/values-pl/strings.xml

@@ -0,0 +1,164 @@
+<?xml version="1.0" encoding="utf-8"?>
+<resources>
+
+    <!-- Validation -->
+    <string name="validate_error_email">Nieprawidłowy email</string>
+    <string name="validate_error_length_min">Za krótki (min. %d)</string>
+    <string name="validate_error_length_max">Za długi (max. %d)</string>
+    <string name="validate_error_required">Wymagany</string>
+    <string name="validate_error_alphanumeric">Tylko litery i cyfry</string>
+
+    <!-- App -->
+    <string name="app_name" translatable="false">Teedy</string>
+    <string name="drawer_open">Otwórz szufladę nawigacji</string>
+    <string name="drawer_close">Zamknij szufladę nawigacji</string>
+    <string name="login_explain"><![CDATA[Aby rozpocząć, musisz pobrać i zainstalować serwer Teedy na <a href="https://github.com/sismics/docs">github.com/sismics/docs</a> i poniżej wprowadzić adres]]></string>
+    <string name="server">Serwer</string>
+    <string name="username">Użytkownik</string>
+    <string name="password">Hasło</string>
+    <string name="login">Zaloguj</string>
+    <string name="ok">OK</string>
+    <string name="cancel">Anuluj</string>
+    <string name="login_fail_title">Błąd logowania</string>
+    <string name="login_fail">Nieprawidłowa nazwa użytkownika lub hasło</string>
+    <string name="network_error_title">Błąd sieci</string>
+    <string name="network_error">Błąd sieci, sprawdź połączenie z interneterm oraz adres URL serwera</string>
+    <string name="invalid_url_title">Nieprawidłowy adres URL</string>
+    <string name="invalid_url">Sprawdź adres URL serwera i spróbuj ponownie</string>
+    <string name="crash_toast_text">Wystąpiła awaria, wysłano raport w celu rozwiązania tego problemu</string>
+    <string name="created_date">Data utworzenia</string>
+    <string name="download_file">Pobierz bieżący plik</string>
+    <string name="download_document">Pobierz</string>
+    <string name="action_search">Znadź dokumenty</string>
+    <string name="all_documents">Wszystkie dokumenty</string>
+    <string name="shared_documents">Udostępnione dokumenty</string>
+    <string name="all_tags">Wszystkie etykiety</string>
+    <string name="no_tags">Brak etykiet</string>
+    <string name="error_loading_tags">Błąd ładowania etykiet</string>
+    <string name="no_documents">Brak dokumentów</string>
+    <string name="error_loading_documents">Błąd ładowania dokumentów</string>
+    <string name="no_files">Brak plików</string>
+    <string name="error_loading_files">Błąd ładowania plików</string>
+    <string name="new_document">Nowy dokument</string>
+    <string name="share">Udostępnij</string>
+    <string name="close">Zamknij</string>
+    <string name="add">Dodaj</string>
+    <string name="add_share_hint">Nazwa udostępnienia (opcjonalnie)</string>
+    <string name="document_not_shared">Ten dokument nie jest obecnie udostępniony</string>
+    <string name="delete_share">Usuń udostępnienie</string>
+    <string name="send_share">Wyślij link udostępnienia</string>
+    <string name="error_loading_shares">Błąd ładowania udostępnień</string>
+    <string name="error_adding_share">Błąd dodawania udostępnienia</string>
+    <string name="share_default_name">Udostępnij link</string>
+    <string name="error_deleting_share">Błąd usuwania udostępnienia</string>
+    <string name="send_share_to">Wyślij link udostępnienia do</string>
+    <string name="upload_file">dodaj plik</string>
+    <string name="upload_from">Przeslij plik z</string>
+    <string name="settings">ustawienia</string>
+    <string name="logout">Wyloguj</string>
+    <string name="version">Wersja</string>
+    <string name="build">Kompilacja</string>
+    <string name="pref_advanced_category">Ustawienia zaawansowane</string>
+    <string name="pref_about_category">O programie</string>
+    <string name="pref_github">GitHub</string>
+    <string name="pref_issue">Zgłoś błąd</string>
+    <string name="pref_clear_cache_title">Wyczyść cache</string>
+    <string name="pref_clear_cache_summary">Wyczyść podręczne pliki</string>
+    <string name="pref_clear_cache_success">Cache wyczyszczony</string>
+    <string name="pref_clear_history_title">Wyczyść historię wyszukiwania</string>
+    <string name="pref_clear_history_summary">Opróżnij ostatnie sugestie wyszukiwania</string>
+    <string name="pref_clear_history_success">Historia wyszukiwania wyczyszczona</string>
+    <string name="pref_cache_size">Rozmiar cache</string>
+    <string name="language_french" translatable="false">Francuski</string>
+    <string name="language_english" translatable="false">Angielski</string>
+    <string name="language_german" translatable="false">Niemiecki</string>
+    <string name="language_polish" translatable="false">Polski</string>
+    <string name="save">Zapisz</string>
+    <string name="edit_document">Edytuj</string>
+    <string name="error_editing_document">Błąd sieci, spróbuj ponownie</string>
+    <string name="please_wait">Proszę czekać</string>
+    <string name="document_editing_message">Wysyłam twoje dane</string>
+    <string name="delete_document">Usuń</string>
+    <string name="delete_document_title">Usuń dokument</string>
+    <string name="delete_document_message">Naprawdę chcesz usunąć dokument i powiązane z nim pliki?</string>
+    <string name="document_delete_failure">Błąd sieci w czasie usuwania tego dokumentu</string>
+    <string name="document_deleting_message">Usuwanie dokumentu</string>
+    <string name="delete_file_title">Usuń plik</string>
+    <string name="delete_file_message">Naprawdę chcesz usunąć ten plik?</string>
+    <string name="file_delete_failure">Błąd sieci w czasie usuwania bieżącego pliku</string>
+    <string name="file_deleting_message">Usuwanie pliku</string>
+    <string name="error_reading_file">Błąd podczas odczytu pliku</string>
+    <string name="upload_notification_title">Teedy</string>
+    <string name="upload_notification_message">Przesyłanie nowego pliku do dokumentu</string>
+    <string name="upload_notification_error">Błąd przsyłania nowego pliku</string>
+    <string name="delete_file">Usuń bieżący plik</string>
+    <string name="advanced_search">Zaawansowane wyszukiwanie</string>
+    <string name="search">Znajdź</string>
+    <string name="add_tags">Dodaj eytkiety</string>
+    <string name="creation_date">Data utworzenia</string>
+    <string name="description">Opis</string>
+    <string name="title">Tytuł</string>
+    <string name="simple_search">Proste wyszukiwanie</string>
+    <string name="fulltext_search">Wyszukiwanie pełnotekstowe</string>
+    <string name="creator">Autor</string>
+    <string name="after_date">Po dacie</string>
+    <string name="before_date">Przed datą</string>
+    <string name="search_tags">Znajdź etykiety</string>
+    <string name="all_languages">Wszystkie języki</string>
+    <string name="toggle_informations">Przełącz informacje</string>
+    <string name="who_can_access">Kto ma dostęp</string>
+    <string name="comments">Komentarze</string>
+    <string name="no_comments">Brak komentarzy</string>
+    <string name="error_loading_comments">Błąd ładowania komentarzy</string>
+    <string name="send">Wyślij</string>
+    <string name="add_comment">Dodaj komentarz</string>
+    <string name="comment_add_failure">Błąd dodawania komentarza</string>
+    <string name="adding_comment">Dodawanie komentarza</string>
+    <string name="comment_delete">Usuń komentarz</string>
+    <string name="deleting_comment">Usuwanie komentarza</string>
+    <string name="error_deleting_comment">Błąd usuwania komentarza</string>
+    <string name="export_pdf">PDF</string>
+    <string name="download">Pobierz</string>
+    <string name="margin">Margines</string>
+    <string name="fit_image_to_page">Dostosuj obraz do strony</string>
+    <string name="export_comments">Eksport komentarzy</string>
+    <string name="export_metadata">Eksport metadanych</string>
+    <string name="mm">mm</string>
+    <string name="download_file_title">Eksport plików Teedy</string>
+    <string name="download_document_title">Eksport dokumentu Teedy</string>
+    <string name="download_pdf_title">Eksport Teedy jako PDF</string>
+    <string name="latest_activity">Ostatnie aktywności</string>
+    <string name="activity">Aktywności</string>
+    <string name="email">E-mail</string>
+    <string name="storage_quota">Limit magazynu</string>
+    <string name="storage_display">%1$d/%2$d MB</string>
+    <string name="validation_code">Kod weryfikujący</string>
+    <string name="shared">Udostępnienie</string>
+    <string name="language">Język</string>
+    <string name="coverage">Zakres</string>
+    <string name="type">Rodzaj</string>
+    <string name="source">Źródło</string>
+    <string name="format">Format</string>
+    <string name="publisher">Udostępniający</string>
+    <string name="identifier">Identifikator</string>
+    <string name="subject">temat</string>
+    <string name="rights">Prawa</string>
+    <string name="contributors">Współtwórcy</string>
+    <string name="relations">Powiązania</string>
+
+    <!-- Audit log -->
+    <string name="auditlog_Acl">ACL</string>
+    <string name="auditlog_Comment">Komentarz</string>
+    <string name="auditlog_Document">Dokument</string>
+    <string name="auditlog_File">Plik</string>
+    <string name="auditlog_Group">Grupa</string>
+    <string name="auditlog_Route">Przepływ</string>
+    <string name="auditlog_RouteModel">Model przepływu</string>
+    <string name="auditlog_Tag">Etykieta</string>
+    <string name="auditlog_User">Użytkownik</string>
+    <string name="auditlog_Webhook">Webhook</string>
+    <string name="auditlog_created">utworzony</string>
+    <string name="auditlog_updated">zaktualizowany</string>
+    <string name="auditlog_deleted">usunięty</string>
+
+</resources>

docs-android/app/src/main/res/values/strings.xml

@@ -72,6 +72,7 @@
     <string name="language_french" translatable="false">Français</string>
     <string name="language_english" translatable="false">English</string>
     <string name="language_german" translatable="false">Deutsch</string>
+    <string name="language_polish" translatable="false">Polski</string>
     <string name="save">Save</string>
     <string name="edit_document">Edit</string>
     <string name="error_editing_document">Network error, please try again</string>

docs-core/pom.xml

@@ -5,8 +5,8 @@
   <parent>
     <groupId>com.sismics.docs</groupId>
     <artifactId>docs-parent</artifactId>
-    <version>1.8</version>
-    <relativePath>..</relativePath>
+    <version>1.12-SNAPSHOT</version>
+    <relativePath>../pom.xml</relativePath>
   </parent>
 
   <modelVersion>4.0.0</modelVersion>
@@ -17,20 +17,10 @@
   <dependencies>
     <!-- Persistence layer dependencies -->
     <dependency>
-      <groupId>org.hibernate</groupId>
+      <groupId>org.hibernate.orm</groupId>
       <artifactId>hibernate-core</artifactId>
     </dependency>
 
-    <dependency>
-      <groupId>org.hibernate</groupId>
-      <artifactId>hibernate-entitymanager</artifactId>
-    </dependency>
-    
-    <dependency>
-      <groupId>org.hibernate</groupId>
-      <artifactId>hibernate-c3p0</artifactId>
-    </dependency>
-    
     <!-- Other external dependencies -->
     <dependency>
       <groupId>joda-time</groupId>
@@ -48,8 +38,8 @@
     </dependency>
 
     <dependency>
-      <groupId>commons-lang</groupId>
-      <artifactId>commons-lang</artifactId>
+      <groupId>org.apache.commons</groupId>
+      <artifactId>commons-lang3</artifactId>
     </dependency>
 
     <dependency>
@@ -63,8 +53,8 @@
     </dependency>
 
     <dependency>
-      <groupId>org.glassfish</groupId>
-      <artifactId>javax.json</artifactId>
+      <groupId>jakarta.json</groupId>
+      <artifactId>jakarta.json-api</artifactId>
     </dependency>
 
     <dependency>
@@ -93,8 +83,8 @@
     </dependency>
 
     <dependency>
-      <groupId>org.mindrot</groupId>
-      <artifactId>jbcrypt</artifactId>
+      <groupId>at.favre.lib</groupId>
+      <artifactId>bcrypt</artifactId>
     </dependency>
 
     <dependency>
@@ -123,13 +113,18 @@
     </dependency>
 
     <dependency>
-      <groupId>com.sun.mail</groupId>
-      <artifactId>javax.mail</artifactId>
+      <groupId>com.squareup.okhttp3</groupId>
+      <artifactId>okhttp</artifactId>
     </dependency>
 
     <dependency>
-      <groupId>com.squareup.okhttp3</groupId>
-      <artifactId>okhttp</artifactId>
+      <groupId>org.apache.directory.api</groupId>
+      <artifactId>api-ldap-client-api</artifactId>
+    </dependency>
+
+    <dependency>
+      <groupId>org.apache.directory.api</groupId>
+      <artifactId>api-ldap-codec-standalone</artifactId>
     </dependency>
 
     <!-- Only there to read old index and rebuild them -->
@@ -190,25 +185,6 @@
       <artifactId>postgresql</artifactId>
     </dependency>
 
-    <!-- JDK 11 JAXB dependencies -->
-    <dependency>
-      <groupId>javax.xml.bind</groupId>
-      <artifactId>jaxb-api</artifactId>
-      <version>2.3.0</version>
-    </dependency>
-
-    <dependency>
-      <groupId>com.sun.xml.bind</groupId>
-      <artifactId>jaxb-core</artifactId>
-      <version>2.3.0</version>
-    </dependency>
-
-    <dependency>
-      <groupId>com.sun.xml.bind</groupId>
-      <artifactId>jaxb-impl</artifactId>
-      <version>2.3.0</version>
-    </dependency>
-
     <!-- Test dependencies -->
     <dependency>
       <groupId>junit</groupId>

docs-core/src/main/java/com/sismics/docs/core/constant/ConfigType.java

@@ -20,6 +20,11 @@ public enum ConfigType {
      */
     GUEST_LOGIN,
 
+    /**
+     * OCR enabled.
+     */
+    OCR_ENABLED,
+
     /**
      * Default language.
      */
@@ -40,7 +45,25 @@ public enum ConfigType {
     INBOX_ENABLED,
     INBOX_HOSTNAME,
     INBOX_PORT,
+    INBOX_STARTTLS,
     INBOX_USERNAME,
     INBOX_PASSWORD,
-    INBOX_TAG
+    INBOX_FOLDER,
+    INBOX_TAG,
+    INBOX_AUTOMATIC_TAGS,
+    INBOX_DELETE_IMPORTED,
+
+    /**
+     * LDAP connection.
+     */
+    LDAP_ENABLED,
+    LDAP_HOST,
+    LDAP_PORT,
+    LDAP_USESSL,
+    LDAP_ADMIN_DN,
+    LDAP_ADMIN_PASSWORD,
+    LDAP_BASE_DN,
+    LDAP_FILTER,
+    LDAP_DEFAULT_EMAIL,
+    LDAP_DEFAULT_STORAGE
 }

docs-core/src/main/java/com/sismics/docs/core/constant/Constants.java

@@ -18,13 +18,18 @@ public class Constants {
     /**
      * Administrator's default password ("admin").
      */
-    public static final String DEFAULT_ADMIN_PASSWORD = "$2a$05$6Ny3TjrW3aVAL1or2SlcR.fhuDgPKp5jp.P9fBXwVNePgeLqb4i3C";
+    public static final String DEFAULT_ADMIN_PASSWORD = "$2y$10$xg0EEKVUehutDI1m6qQhVeFz7SMQMl1jQzjf2KkVsR2c7aV2vyyjK";
 
     /**
      * Administrator's default email.
      */
     public static final String DEFAULT_ADMIN_EMAIL = "admin@localhost";
 
+    /**
+     * Bcrypt default work factor
+     */
+    public static final int DEFAULT_BCRYPT_WORK = 10;
+
     /**
      * Guest user ID.
      */
@@ -38,7 +43,7 @@ public class Constants {
     /**
      * Supported document languages.
      */
-    public static final List<String> SUPPORTED_LANGUAGES = Lists.newArrayList("eng", "fra", "ita", "deu", "spa", "por", "pol", "rus", "ukr", "ara", "hin", "chi_sim", "chi_tra", "jpn", "tha", "kor", "nld", "tur", "heb", "hun");
+    public static final List<String> SUPPORTED_LANGUAGES = Lists.newArrayList("eng", "fra", "ita", "deu", "spa", "por", "pol", "rus", "ukr", "ara", "hin", "chi_sim", "chi_tra", "jpn", "tha", "kor", "nld", "tur", "heb", "hun", "fin", "swe", "lav", "dan", "nor", "vie", "ces", "sqi");
 
     /**
      * Base URL environment variable.
@@ -73,6 +78,11 @@ public class Constants {
      */
     public static final String ADMIN_EMAIL_INIT_ENV = "DOCS_ADMIN_EMAIL_INIT";
 
+    /**
+     * Work factor to be used by Bcrypt
+     */
+    public static final String BCRYPT_WORK_ENV = "DOCS_BCRYPT_WORK";
+
     /**
      * Expiration time of the password recovery in hours.
      */

docs-core/src/main/java/com/sismics/docs/core/dao/AclDao.java

@@ -10,8 +10,8 @@ import com.sismics.docs.core.util.AuditLogUtil;
 import com.sismics.docs.core.util.SecurityUtil;
 import com.sismics.util.context.ThreadLocalContext;
 
-import javax.persistence.EntityManager;
-import javax.persistence.Query;
+import jakarta.persistence.EntityManager;
+import jakarta.persistence.Query;
 import java.util.ArrayList;
 import java.util.Date;
 import java.util.List;
@@ -128,6 +128,9 @@ public class AclDao {
         if (SecurityUtil.skipAclCheck(targetIdList)) {
             return true;
         }
+        if (targetIdList.isEmpty()) {
+            return false;
+        }
 
         EntityManager em = ThreadLocalContext.get().getEntityManager();
         StringBuilder sb = new StringBuilder("select a.ACL_ID_C from T_ACL a ");

docs-core/src/main/java/com/sismics/docs/core/dao/AuditLogDao.java

@@ -12,7 +12,7 @@ import com.sismics.docs.core.util.jpa.QueryParam;
 import com.sismics.docs.core.util.jpa.SortCriteria;
 import com.sismics.util.context.ThreadLocalContext;
 
-import javax.persistence.EntityManager;
+import jakarta.persistence.EntityManager;
 import java.sql.Timestamp;
 import java.util.*;
 

docs-core/src/main/java/com/sismics/docs/core/dao/AuthenticationTokenDao.java

@@ -4,8 +4,8 @@ import com.sismics.docs.core.model.jpa.AuthenticationToken;
 import com.sismics.util.context.ThreadLocalContext;
 import org.joda.time.DateTime;
 
-import javax.persistence.EntityManager;
-import javax.persistence.Query;
+import jakarta.persistence.EntityManager;
+import jakarta.persistence.Query;
 import java.util.Date;
 import java.util.List;
 import java.util.UUID;

docs-core/src/main/java/com/sismics/docs/core/dao/CommentDao.java

@@ -6,9 +6,9 @@ import com.sismics.docs.core.model.jpa.Comment;
 import com.sismics.docs.core.util.AuditLogUtil;
 import com.sismics.util.context.ThreadLocalContext;
 
-import javax.persistence.EntityManager;
-import javax.persistence.NoResultException;
-import javax.persistence.Query;
+import jakarta.persistence.EntityManager;
+import jakarta.persistence.NoResultException;
+import jakarta.persistence.Query;
 import java.sql.Timestamp;
 import java.util.ArrayList;
 import java.util.Date;

docs-core/src/main/java/com/sismics/docs/core/dao/ConfigDao.java

@@ -4,8 +4,8 @@ import com.sismics.docs.core.constant.ConfigType;
 import com.sismics.docs.core.model.jpa.Config;
 import com.sismics.util.context.ThreadLocalContext;
 
-import javax.persistence.EntityManager;
-import javax.persistence.NoResultException;
+import jakarta.persistence.EntityManager;
+import jakarta.persistence.NoResultException;
 
 /**
  * Configuration parameter DAO.

docs-core/src/main/java/com/sismics/docs/core/dao/ContributorDao.java

@@ -4,8 +4,8 @@ import com.sismics.docs.core.dao.dto.ContributorDto;
 import com.sismics.docs.core.model.jpa.Contributor;
 import com.sismics.util.context.ThreadLocalContext;
 
-import javax.persistence.EntityManager;
-import javax.persistence.Query;
+import jakarta.persistence.EntityManager;
+import jakarta.persistence.Query;
 import java.util.ArrayList;
 import java.util.List;
 import java.util.UUID;

docs-core/src/main/java/com/sismics/docs/core/dao/DocumentDao.java

@@ -7,9 +7,10 @@ import com.sismics.docs.core.model.jpa.Document;
 import com.sismics.docs.core.util.AuditLogUtil;
 import com.sismics.util.context.ThreadLocalContext;
 
-import javax.persistence.EntityManager;
-import javax.persistence.NoResultException;
-import javax.persistence.Query;
+import jakarta.persistence.EntityManager;
+import jakarta.persistence.NoResultException;
+import jakarta.persistence.Query;
+import jakarta.persistence.TypedQuery;
 import java.sql.Timestamp;
 import java.util.Date;
 import java.util.List;
@@ -50,10 +51,9 @@ public class DocumentDao {
      * @param limit Limit
      * @return List of documents
      */
-    @SuppressWarnings("unchecked")
     public List<Document> findAll(int offset, int limit) {
         EntityManager em = ThreadLocalContext.get().getEntityManager();
-        Query q = em.createQuery("select d from Document d where d.deleteDate is null");
+        TypedQuery<Document> q = em.createQuery("select d from Document d where d.deleteDate is null", Document.class);
         q.setFirstResult(offset);
         q.setMaxResults(limit);
         return q.getResultList();
@@ -65,10 +65,9 @@ public class DocumentDao {
      * @param userId User ID
      * @return List of documents
      */
-    @SuppressWarnings("unchecked")
     public List<Document> findByUserId(String userId) {
         EntityManager em = ThreadLocalContext.get().getEntityManager();
-        Query q = em.createQuery("select d from Document d where d.userId = :userId and d.deleteDate is null");
+        TypedQuery<Document> q = em.createQuery("select d from Document d where d.userId = :userId and d.deleteDate is null", Document.class);
         q.setParameter("userId", userId);
         return q.getResultList();
     }
@@ -88,7 +87,7 @@ public class DocumentDao {
         }
 
         EntityManager em = ThreadLocalContext.get().getEntityManager();
-        StringBuilder sb = new StringBuilder("select distinct d.DOC_ID_C, d.DOC_TITLE_C, d.DOC_DESCRIPTION_C, d.DOC_SUBJECT_C, d.DOC_IDENTIFIER_C, d.DOC_PUBLISHER_C, d.DOC_FORMAT_C, d.DOC_SOURCE_C, d.DOC_TYPE_C, d.DOC_COVERAGE_C, d.DOC_RIGHTS_C, d.DOC_CREATEDATE_D, d.DOC_UPDATEDATE_D, d.DOC_LANGUAGE_C, ");
+        StringBuilder sb = new StringBuilder("select distinct d.DOC_ID_C, d.DOC_TITLE_C, d.DOC_DESCRIPTION_C, d.DOC_SUBJECT_C, d.DOC_IDENTIFIER_C, d.DOC_PUBLISHER_C, d.DOC_FORMAT_C, d.DOC_SOURCE_C, d.DOC_TYPE_C, d.DOC_COVERAGE_C, d.DOC_RIGHTS_C, d.DOC_CREATEDATE_D, d.DOC_UPDATEDATE_D, d.DOC_LANGUAGE_C, d.DOC_IDFILE_C,");
         sb.append(" (select count(s.SHA_ID_C) from T_SHARE s, T_ACL ac where ac.ACL_SOURCEID_C = d.DOC_ID_C and ac.ACL_TARGETID_C = s.SHA_ID_C and ac.ACL_DELETEDATE_D is null and s.SHA_DELETEDATE_D is null) shareCount, ");
         sb.append(" (select count(f.FIL_ID_C) from T_FILE f where f.FIL_DELETEDATE_D is null and f.FIL_IDDOC_C = d.DOC_ID_C) fileCount, ");
         sb.append(" u.USE_USERNAME_C ");
@@ -122,6 +121,7 @@ public class DocumentDao {
         documentDto.setCreateTimestamp(((Timestamp) o[i++]).getTime());
         documentDto.setUpdateTimestamp(((Timestamp) o[i++]).getTime());
         documentDto.setLanguage((String) o[i++]);
+        documentDto.setFileId((String) o[i++]);
         documentDto.setShared(((Number) o[i++]).intValue() > 0);
         documentDto.setFileCount(((Number) o[i++]).intValue());
         documentDto.setCreator((String) o[i]);
@@ -138,16 +138,16 @@ public class DocumentDao {
         EntityManager em = ThreadLocalContext.get().getEntityManager();
             
         // Get the document
-        Query q = em.createQuery("select d from Document d where d.id = :id and d.deleteDate is null");
-        q.setParameter("id", id);
-        Document documentDb = (Document) q.getSingleResult();
+        TypedQuery<Document> dq = em.createQuery("select d from Document d where d.id = :id and d.deleteDate is null", Document.class);
+        dq.setParameter("id", id);
+        Document documentDb = dq.getSingleResult();
         
         // Delete the document
         Date dateNow = new Date();
         documentDb.setDeleteDate(dateNow);
 
         // Delete linked data
-        q = em.createQuery("update File f set f.deleteDate = :dateNow where f.documentId = :documentId and f.deleteDate is null");
+        Query q = em.createQuery("update File f set f.deleteDate = :dateNow where f.documentId = :documentId and f.deleteDate is null");
         q.setParameter("documentId", id);
         q.setParameter("dateNow", dateNow);
         q.executeUpdate();
@@ -179,10 +179,10 @@ public class DocumentDao {
      */
     public Document getById(String id) {
         EntityManager em = ThreadLocalContext.get().getEntityManager();
-        Query q = em.createQuery("select d from Document d where d.id = :id and d.deleteDate is null");
+        TypedQuery<Document> q = em.createQuery("select d from Document d where d.id = :id and d.deleteDate is null", Document.class);
         q.setParameter("id", id);
         try {
-            return (Document) q.getSingleResult();
+            return q.getSingleResult();
         } catch (NoResultException e) {
             return null;
         }
@@ -199,9 +199,9 @@ public class DocumentDao {
         EntityManager em = ThreadLocalContext.get().getEntityManager();
 
         // Get the document
-        Query q = em.createQuery("select d from Document d where d.id = :id and d.deleteDate is null");
+        TypedQuery<Document> q = em.createQuery("select d from Document d where d.id = :id and d.deleteDate is null", Document.class);
         q.setParameter("id", document.getId());
-        Document documentDb = (Document) q.getSingleResult();
+        Document documentDb = q.getSingleResult();
 
         // Update the document
         documentDb.setTitle(document.getTitle());
@@ -237,7 +237,6 @@ public class DocumentDao {
         query.setParameter("fileId", document.getFileId());
         query.setParameter("id", document.getId());
         query.executeUpdate();
-
     }
 
     /**

docs-core/src/main/java/com/sismics/docs/core/dao/DocumentMetadataDao.java

@@ -5,8 +5,8 @@ import com.sismics.docs.core.dao.dto.DocumentMetadataDto;
 import com.sismics.docs.core.model.jpa.DocumentMetadata;
 import com.sismics.util.context.ThreadLocalContext;
 
-import javax.persistence.EntityManager;
-import javax.persistence.Query;
+import jakarta.persistence.EntityManager;
+import jakarta.persistence.Query;
 import java.util.ArrayList;
 import java.util.List;
 import java.util.UUID;

docs-core/src/main/java/com/sismics/docs/core/dao/FileDao.java

@@ -4,12 +4,16 @@ import com.sismics.docs.core.constant.AuditLogType;
 import com.sismics.docs.core.model.jpa.File;
 import com.sismics.docs.core.util.AuditLogUtil;
 import com.sismics.util.context.ThreadLocalContext;
+import jakarta.persistence.EntityManager;
+import jakarta.persistence.NoResultException;
+import jakarta.persistence.Query;
+import jakarta.persistence.TypedQuery;
 
-import javax.persistence.EntityManager;
-import javax.persistence.NoResultException;
-import javax.persistence.Query;
+import java.util.Collections;
 import java.util.Date;
+import java.util.HashMap;
 import java.util.List;
+import java.util.Map;
 import java.util.UUID;
 
 /**
@@ -47,10 +51,9 @@ public class FileDao {
      * @param limit Limit
      * @return List of files
      */
-    @SuppressWarnings("unchecked")
     public List<File> findAll(int offset, int limit) {
         EntityManager em = ThreadLocalContext.get().getEntityManager();
-        Query q = em.createQuery("select f from File f where f.deleteDate is null");
+        TypedQuery<File> q = em.createQuery("select f from File f where f.deleteDate is null", File.class);
         q.setFirstResult(offset);
         q.setMaxResults(limit);
         return q.getResultList();
@@ -62,28 +65,38 @@ public class FileDao {
      * @param userId User ID
      * @return List of files
      */
-    @SuppressWarnings("unchecked")
     public List<File> findByUserId(String userId) {
         EntityManager em = ThreadLocalContext.get().getEntityManager();
-        Query q = em.createQuery("select f from File f where f.userId = :userId and f.deleteDate is null");
+        TypedQuery<File> q = em.createQuery("select f from File f where f.userId = :userId and f.deleteDate is null", File.class);
         q.setParameter("userId", userId);
         return q.getResultList();
     }
 
     /**
-     * Returns an active file.
+     * Returns a list of active files.
+     *
+     * @param ids Files IDs
+     * @return List of files
+     */
+    public List<File> getFiles(List<String> ids) {
+        EntityManager em = ThreadLocalContext.get().getEntityManager();
+        TypedQuery<File> q = em.createQuery("select f from File f where f.id in :ids and f.deleteDate is null", File.class);
+        q.setParameter("ids", ids);
+        return q.getResultList();
+    }
+    
+    /**
+     * Returns an active file or null.
      * 
      * @param id File ID
-     * @return Document
+     * @return File
      */
     public File getFile(String id) {
-        EntityManager em = ThreadLocalContext.get().getEntityManager();
-        Query q = em.createQuery("select f from File f where f.id = :id and f.deleteDate is null");
-        q.setParameter("id", id);
-        try {
-            return (File) q.getSingleResult();
-        } catch (NoResultException e) {
+        List<File> files = getFiles(List.of(id));
+        if (files.isEmpty()) {
             return null;
+        } else {
+            return files.get(0);
         }
     }
     
@@ -92,15 +105,15 @@ public class FileDao {
      * 
      * @param id File ID
      * @param userId User ID
-     * @return Document
+     * @return File
      */
     public File getFile(String id, String userId) {
         EntityManager em = ThreadLocalContext.get().getEntityManager();
-        Query q = em.createQuery("select f from File f where f.id = :id and f.userId = :userId and f.deleteDate is null");
+        TypedQuery<File> q = em.createQuery("select f from File f where f.id = :id and f.userId = :userId and f.deleteDate is null", File.class);
         q.setParameter("id", id);
         q.setParameter("userId", userId);
         try {
-            return (File) q.getSingleResult();
+            return q.getSingleResult();
         } catch (NoResultException e) {
             return null;
         }
@@ -116,9 +129,9 @@ public class FileDao {
         EntityManager em = ThreadLocalContext.get().getEntityManager();
             
         // Get the file
-        Query q = em.createQuery("select f from File f where f.id = :id and f.deleteDate is null");
+        TypedQuery<File> q = em.createQuery("select f from File f where f.id = :id and f.deleteDate is null", File.class);
         q.setParameter("id", id);
-        File fileDb = (File) q.getSingleResult();
+        File fileDb = q.getSingleResult();
         
         // Delete the file
         Date dateNow = new Date();
@@ -138,9 +151,9 @@ public class FileDao {
         EntityManager em = ThreadLocalContext.get().getEntityManager();
         
         // Get the file
-        Query q = em.createQuery("select f from File f where f.id = :id and f.deleteDate is null");
+        TypedQuery<File> q = em.createQuery("select f from File f where f.id = :id and f.deleteDate is null", File.class);
         q.setParameter("id", file.getId());
-        File fileDb = (File) q.getSingleResult();
+        File fileDb = q.getSingleResult();
 
         // Update the file
         fileDb.setDocumentId(file.getDocumentId());
@@ -150,6 +163,7 @@ public class FileDao {
         fileDb.setMimeType(file.getMimeType());
         fileDb.setVersionId(file.getVersionId());
         fileDb.setLatestVersion(file.isLatestVersion());
+        fileDb.setSize(file.getSize());
 
         return file;
     }
@@ -162,46 +176,82 @@ public class FileDao {
      */
     public File getActiveById(String id) {
         EntityManager em = ThreadLocalContext.get().getEntityManager();
-        Query q = em.createQuery("select f from File f where f.id = :id and f.deleteDate is null");
+        TypedQuery<File> q = em.createQuery("select f from File f where f.id = :id and f.deleteDate is null", File.class);
         q.setParameter("id", id);
         try {
-            return (File) q.getSingleResult();
+            return q.getSingleResult();
         } catch (NoResultException e) {
             return null;
         }
     }
     
     /**
-     * Get files by document ID or all orphan files of an user.
+     * Get files by document ID or all orphan files of a user.
      * 
      * @param userId User ID
      * @param documentId Document ID
      * @return List of files
      */
-    @SuppressWarnings("unchecked")
     public List<File> getByDocumentId(String userId, String documentId) {
         EntityManager em = ThreadLocalContext.get().getEntityManager();
         if (documentId == null) {
-            Query q = em.createQuery("select f from File f where f.documentId is null and f.deleteDate is null and f.latestVersion = true and f.userId = :userId order by f.createDate asc");
+            TypedQuery<File> q = em.createQuery("select f from File f where f.documentId is null and f.deleteDate is null and f.latestVersion = true and f.userId = :userId order by f.createDate asc", File.class);
             q.setParameter("userId", userId);
             return q.getResultList();
+        } else {
+            return getByDocumentsIds(Collections.singleton(documentId));
         }
-        Query q = em.createQuery("select f from File f where f.documentId = :documentId and f.latestVersion = true and f.deleteDate is null order by f.order asc");
-        q.setParameter("documentId", documentId);
+    }
+
+    /**
+     * Get files by documents IDs.
+     *
+     * @param documentIds Documents IDs
+     * @return List of files
+     */
+    public List<File> getByDocumentsIds(Iterable<String> documentIds) {
+        EntityManager em = ThreadLocalContext.get().getEntityManager();
+        TypedQuery<File> q = em.createQuery("select f from File f where f.documentId in :documentIds and f.latestVersion = true and f.deleteDate is null order by f.order asc", File.class);
+        q.setParameter("documentIds", documentIds);
         return q.getResultList();
     }
 
+    /**
+     * Get files count by documents IDs.
+     *
+     * @param documentIds Documents IDs
+     * @return the number of files per document id
+     */
+    public Map<String, Long> countByDocumentsIds(Iterable<String> documentIds) {
+        EntityManager em = ThreadLocalContext.get().getEntityManager();
+        Query q = em.createQuery("select f.documentId, count(*) from File f where f.documentId in :documentIds and f.latestVersion = true and f.deleteDate is null group by (f.documentId)");
+        q.setParameter("documentIds", documentIds);
+        Map<String, Long> result = new HashMap<>();
+        q.getResultList().forEach(o -> {
+            Object[] resultLine = (Object[]) o;
+            result.put((String) resultLine[0], (Long) resultLine[1]);
+        });
+        return result;
+    }
+
     /**
      * Get all files from a version.
      *
      * @param versionId Version ID
      * @return List of files
      */
-    @SuppressWarnings("unchecked")
     public List<File> getByVersionId(String versionId) {
         EntityManager em = ThreadLocalContext.get().getEntityManager();
-        Query q = em.createQuery("select f from File f where f.versionId = :versionId and f.deleteDate is null order by f.order asc");
+        TypedQuery<File> q = em.createQuery("select f from File f where f.versionId = :versionId and f.deleteDate is null order by f.order asc", File.class);
         q.setParameter("versionId", versionId);
         return q.getResultList();
     }
+
+    public List<File> getFilesWithUnknownSize(int limit) {
+        EntityManager em = ThreadLocalContext.get().getEntityManager();
+        TypedQuery<File> q = em.createQuery("select f from File f where f.size = :size and f.deleteDate is null order by f.order asc", File.class);
+        q.setParameter("size", File.UNKNOWN_SIZE);
+        q.setMaxResults(limit);
+        return q.getResultList();
+    }
 }

docs-core/src/main/java/com/sismics/docs/core/dao/GroupDao.java

@@ -12,9 +12,9 @@ import com.sismics.docs.core.util.jpa.QueryUtil;
 import com.sismics.docs.core.util.jpa.SortCriteria;
 import com.sismics.util.context.ThreadLocalContext;
 
-import javax.persistence.EntityManager;
-import javax.persistence.NoResultException;
-import javax.persistence.Query;
+import jakarta.persistence.EntityManager;
+import jakarta.persistence.NoResultException;
+import jakarta.persistence.Query;
 import java.util.*;
 
 /**
@@ -184,10 +184,8 @@ public class GroupDao {
         
         criteriaList.add("g.GRP_DELETEDATE_D is null");
 
-        if (!criteriaList.isEmpty()) {
         sb.append(" where ");
         sb.append(Joiner.on(" and ").join(criteriaList));
-        }
 
         // Perform the search
         QueryParam queryParam = QueryUtil.getSortedQueryParam(new QueryParam(sb.toString(), parameterMap), sortCriteria);

docs-core/src/main/java/com/sismics/docs/core/dao/MetadataDao.java

@@ -12,9 +12,9 @@ import com.sismics.docs.core.util.jpa.QueryUtil;
 import com.sismics.docs.core.util.jpa.SortCriteria;
 import com.sismics.util.context.ThreadLocalContext;
 
-import javax.persistence.EntityManager;
-import javax.persistence.NoResultException;
-import javax.persistence.Query;
+import jakarta.persistence.EntityManager;
+import jakarta.persistence.NoResultException;
+import jakarta.persistence.Query;
 import java.util.*;
 
 /**
@@ -123,10 +123,8 @@ public class MetadataDao {
 
         criteriaList.add("m.MET_DELETEDATE_D is null");
 
-        if (!criteriaList.isEmpty()) {
         sb.append(" where ");
         sb.append(Joiner.on(" and ").join(criteriaList));
-        }
 
         // Perform the search
         QueryParam queryParam = QueryUtil.getSortedQueryParam(new QueryParam(sb.toString(), parameterMap), sortCriteria);

docs-core/src/main/java/com/sismics/docs/core/dao/PasswordRecoveryDao.java

@@ -6,9 +6,9 @@ import com.sismics.util.context.ThreadLocalContext;
 import org.joda.time.DateTime;
 import org.joda.time.DurationFieldType;
 
-import javax.persistence.EntityManager;
-import javax.persistence.NoResultException;
-import javax.persistence.Query;
+import jakarta.persistence.EntityManager;
+import jakarta.persistence.NoResultException;
+import jakarta.persistence.Query;
 import java.util.Date;
 import java.util.UUID;
 

docs-core/src/main/java/com/sismics/docs/core/dao/RelationDao.java

@@ -4,8 +4,8 @@ import com.sismics.docs.core.dao.dto.RelationDto;
 import com.sismics.docs.core.model.jpa.Relation;
 import com.sismics.util.context.ThreadLocalContext;
 
-import javax.persistence.EntityManager;
-import javax.persistence.Query;
+import jakarta.persistence.EntityManager;
+import jakarta.persistence.Query;
 import java.util.*;
 
 /**

docs-core/src/main/java/com/sismics/docs/core/dao/RoleBaseFunctionDao.java

@@ -3,8 +3,8 @@ package com.sismics.docs.core.dao;
 import com.google.common.collect.Sets;
 import com.sismics.util.context.ThreadLocalContext;
 
-import javax.persistence.EntityManager;
-import javax.persistence.Query;
+import jakarta.persistence.EntityManager;
+import jakarta.persistence.Query;
 import java.util.Set;
 
 /**

docs-core/src/main/java/com/sismics/docs/core/dao/RouteDao.java

@@ -11,7 +11,7 @@ import com.sismics.docs.core.util.jpa.QueryUtil;
 import com.sismics.docs.core.util.jpa.SortCriteria;
 import com.sismics.util.context.ThreadLocalContext;
 
-import javax.persistence.EntityManager;
+import jakarta.persistence.EntityManager;
 import java.sql.Timestamp;
 import java.util.*;
 
@@ -64,10 +64,8 @@ public class RouteDao {
         }
         criteriaList.add("r.RTE_DELETEDATE_D is null");
 
-        if (!criteriaList.isEmpty()) {
         sb.append(" where ");
         sb.append(Joiner.on(" and ").join(criteriaList));
-        }
 
         // Perform the search
         QueryParam queryParam = QueryUtil.getSortedQueryParam(new QueryParam(sb.toString(), parameterMap), sortCriteria);

docs-core/src/main/java/com/sismics/docs/core/dao/RouteModelDao.java

@@ -12,9 +12,9 @@ import com.sismics.docs.core.util.jpa.QueryUtil;
 import com.sismics.docs.core.util.jpa.SortCriteria;
 import com.sismics.util.context.ThreadLocalContext;
 
-import javax.persistence.EntityManager;
-import javax.persistence.NoResultException;
-import javax.persistence.Query;
+import jakarta.persistence.EntityManager;
+import jakarta.persistence.NoResultException;
+import jakarta.persistence.Query;
 import java.sql.Timestamp;
 import java.util.*;
 
@@ -145,10 +145,8 @@ public class RouteModelDao {
 
         criteriaList.add("rm.RTM_DELETEDATE_D is null");
 
-        if (!criteriaList.isEmpty()) {
         sb.append(" where ");
         sb.append(Joiner.on(" and ").join(criteriaList));
-        }
 
         // Perform the search
         QueryParam queryParam = QueryUtil.getSortedQueryParam(new QueryParam(sb.toString(), parameterMap), sortCriteria);

docs-core/src/main/java/com/sismics/docs/core/dao/RouteStepDao.java

@@ -12,8 +12,8 @@ import com.sismics.docs.core.util.jpa.QueryUtil;
 import com.sismics.docs.core.util.jpa.SortCriteria;
 import com.sismics.util.context.ThreadLocalContext;
 
-import javax.persistence.EntityManager;
-import javax.persistence.Query;
+import jakarta.persistence.EntityManager;
+import jakarta.persistence.Query;
 import java.sql.Timestamp;
 import java.util.*;
 
@@ -90,10 +90,8 @@ public class RouteStepDao {
         }
         criteriaList.add("rs.RTP_DELETEDATE_D is null");
 
-        if (!criteriaList.isEmpty()) {
         sb.append(" where ");
         sb.append(Joiner.on(" and ").join(criteriaList));
-        }
 
         // Perform the search
         QueryParam queryParam = QueryUtil.getSortedQueryParam(new QueryParam(sb.toString(), parameterMap), sortCriteria);

docs-core/src/main/java/com/sismics/docs/core/dao/ShareDao.java

@@ -3,8 +3,8 @@ package com.sismics.docs.core.dao;
 import com.sismics.docs.core.model.jpa.Share;
 import com.sismics.util.context.ThreadLocalContext;
 
-import javax.persistence.EntityManager;
-import javax.persistence.Query;
+import jakarta.persistence.EntityManager;
+import jakarta.persistence.Query;
 import java.util.Date;
 import java.util.UUID;
 
@@ -19,7 +19,6 @@ public class ShareDao {
      * 
      * @param share Share
      * @return New ID
-     * @throws Exception
      */
     public String create(Share share) {
         // Create the UUID

docs-core/src/main/java/com/sismics/docs/core/dao/TagDao.java

@@ -13,9 +13,9 @@ import com.sismics.docs.core.util.jpa.QueryUtil;
 import com.sismics.docs.core.util.jpa.SortCriteria;
 import com.sismics.util.context.ThreadLocalContext;
 
-import javax.persistence.EntityManager;
-import javax.persistence.NoResultException;
-import javax.persistence.Query;
+import jakarta.persistence.EntityManager;
+import jakarta.persistence.NoResultException;
+import jakarta.persistence.Query;
 import java.util.*;
 
 /**
@@ -199,10 +199,8 @@ public class TagDao {
 
         criteriaList.add("t.TAG_DELETEDATE_D is null");
 
-        if (!criteriaList.isEmpty()) {
         sb.append(" where ");
         sb.append(Joiner.on(" and ").join(criteriaList));
-        }
 
         // Perform the search
         QueryParam queryParam = QueryUtil.getSortedQueryParam(new QueryParam(sb.toString(), parameterMap), sortCriteria);

docs-core/src/main/java/com/sismics/docs/core/dao/UserDao.java

@@ -1,7 +1,14 @@
 package com.sismics.docs.core.dao;
 
 import com.google.common.base.Joiner;
+import com.google.common.base.Strings;
+import at.favre.lib.crypto.bcrypt.BCrypt;
+import org.joda.time.DateTime;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
 import com.sismics.docs.core.constant.AuditLogType;
+import com.sismics.docs.core.constant.Constants;
 import com.sismics.docs.core.dao.criteria.UserCriteria;
 import com.sismics.docs.core.dao.dto.UserDto;
 import com.sismics.docs.core.model.jpa.User;
@@ -11,12 +18,10 @@ import com.sismics.docs.core.util.jpa.QueryParam;
 import com.sismics.docs.core.util.jpa.QueryUtil;
 import com.sismics.docs.core.util.jpa.SortCriteria;
 import com.sismics.util.context.ThreadLocalContext;
-import org.joda.time.DateTime;
-import org.mindrot.jbcrypt.BCrypt;
 
-import javax.persistence.EntityManager;
-import javax.persistence.NoResultException;
-import javax.persistence.Query;
+import jakarta.persistence.EntityManager;
+import jakarta.persistence.NoResultException;
+import jakarta.persistence.Query;
 import java.sql.Timestamp;
 import java.util.*;
 
@@ -26,6 +31,11 @@ import java.util.*;
  * @author jtremeaux
  */
 public class UserDao {
+    /**
+     * Logger.
+     */
+    private static final Logger log = LoggerFactory.getLogger(UserDao.class);
+
     /**
      * Authenticates an user.
      * 
@@ -39,7 +49,8 @@ public class UserDao {
         q.setParameter("username", username);
         try {
             User user = (User) q.getSingleResult();
-            if (!BCrypt.checkpw(password, user.getPassword()) || user.getDisableDate() != null) {
+            BCrypt.Result result = BCrypt.verifyer().verify(password.toCharArray(), user.getPassword());
+            if (!result.verified || user.getDisableDate() != null) {
                 return null;
             }
             return user;
@@ -277,7 +288,21 @@ public class UserDao {
      * @return Hashed password
      */
     private String hashPassword(String password) {
-        return BCrypt.hashpw(password, BCrypt.gensalt());
+        int bcryptWork = Constants.DEFAULT_BCRYPT_WORK;
+        String envBcryptWork = System.getenv(Constants.BCRYPT_WORK_ENV);
+        if (!Strings.isNullOrEmpty(envBcryptWork)) {
+            try {
+                int envBcryptWorkInt = Integer.parseInt(envBcryptWork);
+                if (envBcryptWorkInt >= 4 && envBcryptWorkInt <= 31) {
+                    bcryptWork = envBcryptWorkInt;
+                } else {
+                    log.warn(Constants.BCRYPT_WORK_ENV + " needs to be in range 4...31. Falling back to " + Constants.DEFAULT_BCRYPT_WORK + ".");
+                }
+            } catch (NumberFormatException e) {
+                log.warn(Constants.BCRYPT_WORK_ENV + " needs to be a number in range 4...31. Falling back to " + Constants.DEFAULT_BCRYPT_WORK + ".");
+            }
+        }
+        return BCrypt.withDefaults().hashToString(bcryptWork, password.toCharArray());
     }
     
     /**

docs-core/src/main/java/com/sismics/docs/core/dao/VocabularyDao.java

@@ -3,9 +3,9 @@ package com.sismics.docs.core.dao;
 import com.sismics.docs.core.model.jpa.Vocabulary;
 import com.sismics.util.context.ThreadLocalContext;
 
-import javax.persistence.EntityManager;
-import javax.persistence.NoResultException;
-import javax.persistence.Query;
+import jakarta.persistence.EntityManager;
+import jakarta.persistence.NoResultException;
+import jakarta.persistence.Query;
 import java.util.List;
 import java.util.UUID;
 
@@ -20,7 +20,6 @@ public class VocabularyDao {
      * 
      * @param vocabulary Vocabulary
      * @return New ID
-     * @throws Exception
      */
     public String create(Vocabulary vocabulary) {
         // Create the UUID

docs-core/src/main/java/com/sismics/docs/core/dao/WebhookDao.java

@@ -9,9 +9,9 @@ import com.sismics.docs.core.util.jpa.QueryUtil;
 import com.sismics.docs.core.util.jpa.SortCriteria;
 import com.sismics.util.context.ThreadLocalContext;
 
-import javax.persistence.EntityManager;
-import javax.persistence.NoResultException;
-import javax.persistence.Query;
+import jakarta.persistence.EntityManager;
+import jakarta.persistence.NoResultException;
+import jakarta.persistence.Query;
 import java.sql.Timestamp;
 import java.util.*;
 
@@ -42,10 +42,8 @@ public class WebhookDao {
         }
         criteriaList.add("w.WHK_DELETEDATE_D is null");
 
-        if (!criteriaList.isEmpty()) {
         sb.append(" where ");
         sb.append(Joiner.on(" and ").join(criteriaList));
-        }
 
         // Perform the search
         QueryParam queryParam = QueryUtil.getSortedQueryParam(new QueryParam(sb.toString(), parameterMap), sortCriteria);

docs-core/src/main/java/com/sismics/docs/core/dao/criteria/DocumentCriteria.java

@@ -1,5 +1,6 @@
 package com.sismics.docs.core.dao.criteria;
 
+import java.util.ArrayList;
 import java.util.Date;
 import java.util.List;
 
@@ -18,7 +19,7 @@ public class DocumentCriteria {
     /**
      * Search query.
      */
-    private String search;
+    private String simpleSearch;
     
     /**
      * Full content search query.
@@ -49,13 +50,13 @@ public class DocumentCriteria {
      * Tag IDs.
      * The first level list will be AND'ed and the second level list will be OR'ed.
      */
-    private List<List<String>> tagIdList;
+    private List<List<String>> tagIdList = new ArrayList<>();
     
     /**
-     * Tag IDs to excluded.
+     * Tag IDs to exclude.
      * The first and second level list will be excluded.
      */
-    private List<List<String>> excludedTagIdList;
+    private List<List<String>> excludedTagIdList = new ArrayList<>();
 
     /**
      * Shared status.
@@ -82,6 +83,11 @@ public class DocumentCriteria {
      */
     private String mimeType;
 
+    /**
+     * Titles to include.
+     */
+    private List<String> titleList = new ArrayList<>();
+
     public List<String> getTargetIdList() {
         return targetIdList;
     }
@@ -90,12 +96,12 @@ public class DocumentCriteria {
         this.targetIdList = targetIdList;
     }
 
-    public String getSearch() {
-        return search;
+    public String getSimpleSearch() {
+        return simpleSearch;
     }
 
-    public void setSearch(String search) {
-        this.search = search;
+    public void setSimpleSearch(String search) {
+        this.simpleSearch = search;
     }
 
     public String getFullSearch() {
@@ -126,19 +132,10 @@ public class DocumentCriteria {
         return tagIdList;
     }
 
-    public void setTagIdList(List<List<String>> tagIdList) {
-        this.tagIdList = tagIdList;
-    }
-
     public List<List<String>> getExcludedTagIdList() {
         return excludedTagIdList;
     }
 
-    public DocumentCriteria setExcludedTagIdList(List<List<String>> excludedTagIdList) {
-        this.excludedTagIdList = excludedTagIdList;
-        return this;
-    }
-
     public Boolean getShared() {
         return shared;
     }
@@ -163,10 +160,6 @@ public class DocumentCriteria {
         this.creatorId = creatorId;
     }
  
-    public Boolean getActiveRoute() {
-        return activeRoute;
-    }
-
     public Date getUpdateDateMin() {
         return updateDateMin;
     }
@@ -183,6 +176,10 @@ public class DocumentCriteria {
         this.updateDateMax = updateDateMax;
     }
 
+    public Boolean getActiveRoute() {
+        return activeRoute;
+    }
+
     public void setActiveRoute(Boolean activeRoute) {
         this.activeRoute = activeRoute;
     }
@@ -194,4 +191,8 @@ public class DocumentCriteria {
     public void setMimeType(String mimeType) {
         this.mimeType = mimeType;
     }
+
+    public List<String> getTitleList() {
+        return titleList;
+    }
 }

docs-core/src/main/java/com/sismics/docs/core/dao/dto/RouteStepDto.java

@@ -3,8 +3,8 @@ package com.sismics.docs.core.dao.dto;
 import com.sismics.docs.core.constant.RouteStepType;
 import com.sismics.util.JsonUtil;
 
-import javax.json.Json;
-import javax.json.JsonObjectBuilder;
+import jakarta.json.Json;
+import jakarta.json.JsonObjectBuilder;
 
 /**
  * Route step DTO.

docs-core/src/main/java/com/sismics/docs/core/event/DocumentCreatedAsyncEvent.java

@@ -1,7 +1,6 @@
 package com.sismics.docs.core.event;
 
 import com.google.common.base.MoreObjects;
-import com.sismics.docs.core.model.jpa.Document;
 
 /**
  * Document created event.
@@ -10,32 +9,22 @@ import com.sismics.docs.core.model.jpa.Document;
  */
 public class DocumentCreatedAsyncEvent extends UserEvent {
     /**
-     * Created document.
+     * Document ID.
      */
-    private Document document;
+    private String documentId;
 
-    /**
-     * Getter of document.
-     *
-     * @return the document
-     */
-    public Document getDocument() {
-        return document;
+    public String getDocumentId() {
+        return documentId;
     }
 
-    /**
-     * Setter of document.
-     *
-     * @param document document
-     */
-    public void setDocument(Document document) {
-        this.document = document;
+    public void setDocumentId(String documentId) {
+        this.documentId = documentId;
     }
 
     @Override
     public String toString() {
         return MoreObjects.toStringHelper(this)
-            .add("document", document)
+                .add("documentId", documentId)
                 .toString();
     }
 }

docs-core/src/main/java/com/sismics/docs/core/event/FileDeletedAsyncEvent.java

@@ -1,7 +1,6 @@
 package com.sismics.docs.core.event;
 
 import com.google.common.base.MoreObjects;
-import com.sismics.docs.core.model.jpa.File;
 
 /**
  * File deleted event.
@@ -10,22 +9,33 @@ import com.sismics.docs.core.model.jpa.File;
  */
 public class FileDeletedAsyncEvent extends UserEvent {
     /**
-     * Deleted file.
+     * File ID.
      */
-    private File file;
+    private String fileId;
 
-    public File getFile() {
-        return file;
+    private Long fileSize;
+
+    public String getFileId() {
+        return fileId;
     }
 
-    public void setFile(File file) {
-        this.file = file;
+    public void setFileId(String fileId) {
+        this.fileId = fileId;
+    }
+
+    public Long getFileSize() {
+        return fileSize;
+    }
+
+    public void setFileSize(Long fileSize) {
+        this.fileSize = fileSize;
     }
 
     @Override
     public String toString() {
         return MoreObjects.toStringHelper(this)
-            .add("file", file)
+            .add("fileId", fileId)
+            .add("fileSize", fileSize)
             .toString();
     }
 }

docs-core/src/main/java/com/sismics/docs/core/event/FileEvent.java

@@ -1,7 +1,6 @@
 package com.sismics.docs.core.event;
 
 import com.google.common.base.MoreObjects;
-import com.sismics.docs.core.model.jpa.File;
 
 import java.nio.file.Path;
 
@@ -12,9 +11,9 @@ import java.nio.file.Path;
  */
 public abstract class FileEvent extends UserEvent {
     /**
-     * Created file.
+     * File ID.
      */
-    private File file;
+    private String fileId;
     
     /**
      * Language of the file.
@@ -26,12 +25,12 @@ public abstract class FileEvent extends UserEvent {
      */
     private Path unencryptedFile;
 
-    public File getFile() {
-        return file;
+    public String getFileId() {
+        return fileId;
     }
 
-    public void setFile(File file) {
-        this.file = file;
+    public void setFileId(String fileId) {
+        this.fileId = fileId;
     }
 
     public String getLanguage() {
@@ -54,7 +53,7 @@ public abstract class FileEvent extends UserEvent {
     @Override
     public String toString() {
         return MoreObjects.toStringHelper(this)
-            .add("file", file)
+            .add("fileId", fileId)
             .add("language", language)
             .toString();
     }

docs-core/src/main/java/com/sismics/docs/core/listener/async/DocumentCreatedAsyncListener.java

@@ -3,9 +3,11 @@ package com.sismics.docs.core.listener.async;
 import com.google.common.eventbus.AllowConcurrentEvents;
 import com.google.common.eventbus.Subscribe;
 import com.sismics.docs.core.dao.ContributorDao;
+import com.sismics.docs.core.dao.DocumentDao;
 import com.sismics.docs.core.event.DocumentCreatedAsyncEvent;
 import com.sismics.docs.core.model.context.AppContext;
 import com.sismics.docs.core.model.jpa.Contributor;
+import com.sismics.docs.core.model.jpa.Document;
 import com.sismics.docs.core.util.TransactionUtil;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
@@ -34,15 +36,22 @@ public class DocumentCreatedAsyncListener {
         }
 
         TransactionUtil.handle(() -> {
+            // Fetch a fresh document
+            Document document = new DocumentDao().getById(event.getDocumentId());
+            if (document == null) {
+                // The document has been deleted since
+                return;
+            }
+
             // Add the first contributor (the creator of the document)
             ContributorDao contributorDao = new ContributorDao();
             Contributor contributor = new Contributor();
-            contributor.setDocumentId(event.getDocument().getId());
+            contributor.setDocumentId(event.getDocumentId());
             contributor.setUserId(event.getUserId());
             contributorDao.create(contributor);
 
             // Update index
-            AppContext.getInstance().getIndexingHandler().createDocument(event.getDocument());
+            AppContext.getInstance().getIndexingHandler().createDocument(document);
         });
     }
 }

docs-core/src/main/java/com/sismics/docs/core/listener/async/FileDeletedAsyncListener.java

@@ -2,9 +2,11 @@ package com.sismics.docs.core.listener.async;
 
 import com.google.common.eventbus.AllowConcurrentEvents;
 import com.google.common.eventbus.Subscribe;
+import com.sismics.docs.core.dao.UserDao;
 import com.sismics.docs.core.event.FileDeletedAsyncEvent;
 import com.sismics.docs.core.model.context.AppContext;
 import com.sismics.docs.core.model.jpa.File;
+import com.sismics.docs.core.model.jpa.User;
 import com.sismics.docs.core.util.FileUtil;
 import com.sismics.docs.core.util.TransactionUtil;
 import org.slf4j.Logger;
@@ -33,14 +35,31 @@ public class FileDeletedAsyncListener {
         if (log.isInfoEnabled()) {
             log.info("File deleted event: " + event.toString());
         }
+        TransactionUtil.handle(() -> {
+            // Update the user quota
+            UserDao userDao = new UserDao();
+            User user = userDao.getById(event.getUserId());
+            if (user != null) {
+                Long fileSize = event.getFileSize();
+
+                if (fileSize.equals(File.UNKNOWN_SIZE)) {
+                    // The file size was not in the database, in this case we need to get from the unencrypted size.
+                    fileSize = FileUtil.getFileSize(event.getFileId(), user);
+                }
+
+                if (! fileSize.equals(File.UNKNOWN_SIZE)) {
+                    user.setStorageCurrent(user.getStorageCurrent() - fileSize);
+                    userDao.updateQuota(user);
+                }
+            }
+        });
 
         // Delete the file from storage
-        File file = event.getFile();
-        FileUtil.delete(file);
+        FileUtil.delete(event.getFileId());
 
         TransactionUtil.handle(() -> {
             // Update index
-            AppContext.getInstance().getIndexingHandler().deleteDocument(file.getId());
+            AppContext.getInstance().getIndexingHandler().deleteDocument(event.getFileId());
         });
     }
 }

docs-core/src/main/java/com/sismics/docs/core/listener/async/FileProcessingAsyncListener.java

@@ -28,6 +28,7 @@ import java.io.OutputStream;
 import java.nio.file.Files;
 import java.nio.file.Path;
 import java.text.MessageFormat;
+import java.util.concurrent.atomic.AtomicReference;
 
 /**
  * Listener on file processing.
@@ -52,15 +53,7 @@ public class FileProcessingAsyncListener {
             log.info("File created event: " + event.toString());
         }
 
-        TransactionUtil.handle(() -> {
-            // Generate thumbnail, extract content
-            processFile(event);
-
-            // Update index
-            AppContext.getInstance().getIndexingHandler().createFile(event.getFile());
-        });
-
-        FileUtil.endProcessingFile(event.getFile().getId());
+        processFile(event, true);
     }
 
     /**
@@ -71,44 +64,85 @@ public class FileProcessingAsyncListener {
     @Subscribe
     @AllowConcurrentEvents
     public void on(final FileUpdatedAsyncEvent event) {
-        if (log.isInfoEnabled()) {
         log.info("File updated event: " + event.toString());
-        }
 
-        TransactionUtil.handle(() -> {
-            // Generate thumbnail, extract content
-            processFile(event);
-
-            // Update index
-            AppContext.getInstance().getIndexingHandler().updateFile(event.getFile());
-        });
-
-        FileUtil.endProcessingFile(event.getFile().getId());
+        processFile(event, false);
     }
 
     /**
-     * Process the file (create/update).
+     * Process a file :
+     * Generate thumbnails
+     * Extract and save text content
      *
      * @param event File event
+     * @param isFileCreated True if the file was just created
      */
-    private void processFile(FileEvent event) {
-        // Find a format handler
-        final File file = event.getFile();
-        FormatHandler formatHandler = FormatHandlerUtil.find(file.getMimeType());
-        if (formatHandler == null) {
-            log.info("Format unhandled: " + file.getMimeType());
-            FileUtil.endProcessingFile(file.getId());
+    private void processFile(FileEvent event, boolean isFileCreated) {
+        AtomicReference<File> file = new AtomicReference<>();
+        AtomicReference<User> user = new AtomicReference<>();
+
+        // Open a first transaction to get what we need to start the processing
+        TransactionUtil.handle(() -> {
+            // Generate thumbnail, extract content
+            file.set(new FileDao().getActiveById(event.getFileId()));
+            if (file.get() == null) {
+                // The file has been deleted since
                 return;
             }
 
             // Get the creating user from the database for its private key
             UserDao userDao = new UserDao();
-        User user = userDao.getById(file.getUserId());
-        if (user == null) {
-            // The user has been deleted meanwhile
-            FileUtil.endProcessingFile(file.getId());
+            user.set(userDao.getById(file.get().getUserId()));
+        });
+
+        // Process the file outside of a transaction
+        if (user.get() == null || file.get() == null) {
+            // The user or file has been deleted
+            FileUtil.endProcessingFile(event.getFileId());
             return;
         }
+        String content = extractContent(event, user.get(), file.get());
+
+        // Open a new transaction to save the file content
+        TransactionUtil.handle(() -> {
+            // Save the file to database
+            FileDao fileDao = new FileDao();
+            File freshFile = fileDao.getActiveById(event.getFileId());
+            if (freshFile == null) {
+                // The file has been deleted since the text extraction started, ignore the result
+                return;
+            }
+
+            freshFile.setContent(content);
+            fileDao.update(freshFile);
+
+            // Update index with the updated file
+            if (isFileCreated) {
+                AppContext.getInstance().getIndexingHandler().createFile(freshFile);
+            } else {
+                AppContext.getInstance().getIndexingHandler().updateFile(freshFile);
+            }
+        });
+
+        FileUtil.endProcessingFile(event.getFileId());
+    }
+
+    /**
+     * Extract text content from a file.
+     * This is executed outside of a transaction.
+     *
+     * @param event File event
+     * @param user User whom created the file
+     * @param file Fresh file
+     * @return Text content
+     */
+    private String extractContent(FileEvent event, User user, File file) {
+        // Find a format handler
+        FormatHandler formatHandler = FormatHandlerUtil.find(file.getMimeType());
+        if (formatHandler == null) {
+            log.info("Format unhandled: " + file.getMimeType());
+            return null;
+        }
 
         // Generate file variations
         try {
@@ -132,28 +166,21 @@ public class FileProcessingAsyncListener {
                     ImageUtil.writeJpeg(thumbnail, outputStream);
                 }
             }
-        } catch (Exception e) {
-            log.error("Unable to generate thumbnails", e);
+        } catch (Throwable e) {
+            log.error("Unable to generate thumbnails for: " + file, e);
         }
 
         // Extract text content from the file
         long startTime = System.currentTimeMillis();
         String content = null;
+        log.info("Start extracting content from: " + file);
         try {
             content = formatHandler.extractContent(event.getLanguage(), event.getUnencryptedFile());
-        } catch (Exception e) {
-            log.error("Error extracting content from: " + event.getFile(), e);
+        } catch (Throwable e) {
+            log.error("Error extracting content from: " + file, e);
         }
-        log.info(MessageFormat.format("File content extracted in {0}ms", System.currentTimeMillis() - startTime));
+        log.info(MessageFormat.format("File content extracted in {0}ms: " + file.getId(), System.currentTimeMillis() - startTime));
 
-        // Save the file to database
-        FileDao fileDao = new FileDao();
-        if (fileDao.getActiveById(file.getId()) == null) {
-            // The file has been deleted since the text extraction started, ignore the result
-            return;
-        }
-
-        file.setContent(content);
-        fileDao.update(file);
+        return content;
     }
 }

docs-core/src/main/java/com/sismics/docs/core/listener/async/WebhookAsyncListener.java

@@ -36,7 +36,7 @@ public class WebhookAsyncListener {
     @Subscribe
     @AllowConcurrentEvents
     public void on(final DocumentCreatedAsyncEvent event) {
-        triggerWebhook(WebhookEvent.DOCUMENT_CREATED, event.getDocument().getId());
+        triggerWebhook(WebhookEvent.DOCUMENT_CREATED, event.getDocumentId());
     }
 
     @Subscribe
@@ -54,19 +54,19 @@ public class WebhookAsyncListener {
     @Subscribe
     @AllowConcurrentEvents
     public void on(final FileCreatedAsyncEvent event) {
-        triggerWebhook(WebhookEvent.FILE_CREATED, event.getFile().getId());
+        triggerWebhook(WebhookEvent.FILE_CREATED, event.getFileId());
     }
 
     @Subscribe
     @AllowConcurrentEvents
     public void on(final FileUpdatedAsyncEvent event) {
-        triggerWebhook(WebhookEvent.FILE_UPDATED, event.getFile().getId());
+        triggerWebhook(WebhookEvent.FILE_UPDATED, event.getFileId());
     }
 
     @Subscribe
     @AllowConcurrentEvents
     public void on(final FileDeletedAsyncEvent event) {
-        triggerWebhook(WebhookEvent.FILE_DELETED, event.getFile().getId());
+        triggerWebhook(WebhookEvent.FILE_DELETED, event.getFileId());
     }
 
     /**
@@ -86,7 +86,7 @@ public class WebhookAsyncListener {
             }
         });
 
-        RequestBody body = RequestBody.create(JSON, "{\"event\": \"" + event.name() + "\", \"id\": \"" + id + "\"}");
+        RequestBody body = RequestBody.create("{\"event\": \"" + event.name() + "\", \"id\": \"" + id + "\"}", JSON);
 
         for (String webhookUrl : webhookUrlList) {
             Request request = new Request.Builder()

docs-core/src/main/java/com/sismics/docs/core/model/context/AppContext.java

@@ -1,14 +1,15 @@
 package com.sismics.docs.core.model.context;
 
+import com.google.common.base.Strings;
 import com.google.common.collect.Lists;
 import com.google.common.eventbus.AsyncEventBus;
 import com.google.common.eventbus.EventBus;
 import com.sismics.docs.core.constant.Constants;
 import com.sismics.docs.core.dao.UserDao;
-import com.sismics.docs.core.event.RebuildIndexAsyncEvent;
 import com.sismics.docs.core.listener.async.*;
 import com.sismics.docs.core.model.jpa.User;
 import com.sismics.docs.core.service.FileService;
+import com.sismics.docs.core.service.FileSizeService;
 import com.sismics.docs.core.service.InboxService;
 import com.sismics.docs.core.util.PdfUtil;
 import com.sismics.docs.core.util.indexing.IndexingHandler;
@@ -65,6 +66,11 @@ public class AppContext {
      */
     private FileService fileService;
 
+    /**
+     * File size service.
+     */
+    private FileSizeService fileSizeService;
+
     /**
      * Asynchronous executors.
      */
@@ -81,7 +87,7 @@ public class AppContext {
             List<Class<? extends IndexingHandler>> indexingHandlerList = Lists.newArrayList(
                     new ClasspathScanner<IndexingHandler>().findClasses(IndexingHandler.class, "com.sismics.docs.core.util.indexing"));
             for (Class<? extends IndexingHandler> handlerClass : indexingHandlerList) {
-                IndexingHandler handler = handlerClass.newInstance();
+                IndexingHandler handler = handlerClass.getDeclaredConstructor().newInstance();
                 if (handler.accept()) {
                     indexingHandler = handler;
                     break;
@@ -102,12 +108,17 @@ public class AppContext {
         inboxService.startAsync();
         inboxService.awaitRunning();
 
+        // Start file size service
+        fileSizeService = new FileSizeService();
+        fileSizeService.startAsync();
+        fileSizeService.awaitRunning();
+
         // Register fonts
         PdfUtil.registerFonts();
 
         // Change the admin password if needed
         String envAdminPassword = System.getenv(Constants.ADMIN_PASSWORD_INIT_ENV);
-        if (envAdminPassword != null) {
+        if (!Strings.isNullOrEmpty(envAdminPassword)) {
             UserDao userDao = new UserDao();
             User adminUser = userDao.getById("admin");
             if (Constants.DEFAULT_ADMIN_PASSWORD.equals(adminUser.getPassword())) {
@@ -118,7 +129,7 @@ public class AppContext {
 
         // Change the admin email if needed
         String envAdminEmail = System.getenv(Constants.ADMIN_EMAIL_INIT_ENV);
-        if (envAdminEmail != null) {
+        if (!Strings.isNullOrEmpty(envAdminEmail)) {
             UserDao userDao = new UserDao();
             User adminUser = userDao.getById("admin");
             if (Constants.DEFAULT_ADMIN_EMAIL.equals(adminUser.getEmail())) {
@@ -172,7 +183,8 @@ public class AppContext {
         if (EnvironmentUtil.isUnitTest()) {
             return new EventBus();
         } else {
-            ThreadPoolExecutor executor = new ThreadPoolExecutor(8, 8,
+            int threadCount = Math.max(Runtime.getRuntime().availableProcessors() / 2, 2);
+            ThreadPoolExecutor executor = new ThreadPoolExecutor(threadCount, threadCount,
                     1L, TimeUnit.MINUTES,
                     new LinkedBlockingQueue<>());
             asyncExecutorList.add(executor);
@@ -237,6 +249,10 @@ public class AppContext {
             fileService.stopAsync();
         }
 
+        if (fileSizeService != null) {
+            fileSizeService.stopAsync();
+        }
+
         instance = null;
     }
 }

docs-core/src/main/java/com/sismics/docs/core/model/jpa/Acl.java

@@ -4,7 +4,7 @@ import com.google.common.base.MoreObjects;
 import com.sismics.docs.core.constant.AclType;
 import com.sismics.docs.core.constant.PermType;
 
-import javax.persistence.*;
+import jakarta.persistence.*;
 import java.util.Date;
 
 /**

docs-core/src/main/java/com/sismics/docs/core/model/jpa/AuditLog.java

@@ -2,12 +2,12 @@ package com.sismics.docs.core.model.jpa;
 
 import java.util.Date;
 
-import javax.persistence.Column;
-import javax.persistence.Entity;
-import javax.persistence.EnumType;
-import javax.persistence.Enumerated;
-import javax.persistence.Id;
-import javax.persistence.Table;
+import jakarta.persistence.Column;
+import jakarta.persistence.Entity;
+import jakarta.persistence.EnumType;
+import jakarta.persistence.Enumerated;
+import jakarta.persistence.Id;
+import jakarta.persistence.Table;
 
 import com.google.common.base.MoreObjects;
 import com.sismics.docs.core.constant.AuditLogType;

docs-core/src/main/java/com/sismics/docs/core/model/jpa/AuthenticationToken.java

@@ -2,10 +2,10 @@ package com.sismics.docs.core.model.jpa;
 
 import java.util.Date;
 
-import javax.persistence.Column;
-import javax.persistence.Entity;
-import javax.persistence.Id;
-import javax.persistence.Table;
+import jakarta.persistence.Column;
+import jakarta.persistence.Entity;
+import jakarta.persistence.Id;
+import jakarta.persistence.Table;
 
 import com.google.common.base.MoreObjects;
 

docs-core/src/main/java/com/sismics/docs/core/model/jpa/BaseFunction.java

@@ -1,9 +1,9 @@
 package com.sismics.docs.core.model.jpa;
 
-import javax.persistence.Column;
-import javax.persistence.Entity;
-import javax.persistence.Id;
-import javax.persistence.Table;
+import jakarta.persistence.Column;
+import jakarta.persistence.Entity;
+import jakarta.persistence.Id;
+import jakarta.persistence.Table;
 
 import com.google.common.base.MoreObjects;
 

docs-core/src/main/java/com/sismics/docs/core/model/jpa/Comment.java

@@ -2,10 +2,10 @@ package com.sismics.docs.core.model.jpa;
 
 import java.util.Date;
 
-import javax.persistence.Column;
-import javax.persistence.Entity;
-import javax.persistence.Id;
-import javax.persistence.Table;
+import jakarta.persistence.Column;
+import jakarta.persistence.Entity;
+import jakarta.persistence.Id;
+import jakarta.persistence.Table;
 
 import com.google.common.base.MoreObjects;
 

docs-core/src/main/java/com/sismics/docs/core/model/jpa/Config.java

@@ -1,11 +1,11 @@
 package com.sismics.docs.core.model.jpa;
 
-import javax.persistence.Column;
-import javax.persistence.Entity;
-import javax.persistence.EnumType;
-import javax.persistence.Enumerated;
-import javax.persistence.Id;
-import javax.persistence.Table;
+import jakarta.persistence.Column;
+import jakarta.persistence.Entity;
+import jakarta.persistence.EnumType;
+import jakarta.persistence.Enumerated;
+import jakarta.persistence.Id;
+import jakarta.persistence.Table;
 
 import com.google.common.base.MoreObjects;
 import com.sismics.docs.core.constant.ConfigType;

docs-core/src/main/java/com/sismics/docs/core/model/jpa/Contributor.java

@@ -1,9 +1,9 @@
 package com.sismics.docs.core.model.jpa;
 
-import javax.persistence.Column;
-import javax.persistence.Entity;
-import javax.persistence.Id;
-import javax.persistence.Table;
+import jakarta.persistence.Column;
+import jakarta.persistence.Entity;
+import jakarta.persistence.Id;
+import jakarta.persistence.Table;
 
 import com.google.common.base.MoreObjects;
 

docs-core/src/main/java/com/sismics/docs/core/model/jpa/Document.java

@@ -2,10 +2,10 @@ package com.sismics.docs.core.model.jpa;
 
 import com.google.common.base.MoreObjects;
 
-import javax.persistence.Column;
-import javax.persistence.Entity;
-import javax.persistence.Id;
-import javax.persistence.Table;
+import jakarta.persistence.Column;
+import jakarta.persistence.Entity;
+import jakarta.persistence.Id;
+import jakarta.persistence.Table;
 import java.util.Date;
 
 /**

docs-core/src/main/java/com/sismics/docs/core/model/jpa/DocumentMetadata.java

@@ -2,10 +2,10 @@ package com.sismics.docs.core.model.jpa;
 
 import com.google.common.base.MoreObjects;
 
-import javax.persistence.Column;
-import javax.persistence.Entity;
-import javax.persistence.Id;
-import javax.persistence.Table;
+import jakarta.persistence.Column;
+import jakarta.persistence.Entity;
+import jakarta.persistence.Id;
+import jakarta.persistence.Table;
 import java.io.Serializable;
 
 /**

docs-core/src/main/java/com/sismics/docs/core/model/jpa/DocumentTag.java

@@ -3,10 +3,10 @@ package com.sismics.docs.core.model.jpa;
 import java.io.Serializable;
 import java.util.Date;
 
-import javax.persistence.Column;
-import javax.persistence.Entity;
-import javax.persistence.Id;
-import javax.persistence.Table;
+import jakarta.persistence.Column;
+import jakarta.persistence.Entity;
+import jakarta.persistence.Id;
+import jakarta.persistence.Table;
 
 import com.google.common.base.MoreObjects;
 

docs-core/src/main/java/com/sismics/docs/core/model/jpa/File.java

@@ -4,7 +4,7 @@ import com.google.common.base.MoreObjects;
 import com.google.common.base.Strings;
 import com.sismics.util.mime.MimeTypeUtil;
 
-import javax.persistence.*;
+import jakarta.persistence.*;
 import java.util.Date;
 
 /**
@@ -49,7 +49,6 @@ public class File implements Loggable {
     /**
      * OCR-ized content.
      */
-    @Lob
     @Column(name = "FIL_CONTENT_C")
     private String content;
     
@@ -89,6 +88,14 @@ public class File implements Loggable {
     @Column(name = "FIL_LATESTVERSION_B", nullable = false)
     private boolean latestVersion;
 
+    public static final Long UNKNOWN_SIZE = -1L;
+
+    /**
+     * Can be {@link File#UNKNOWN_SIZE} if the size has not been stored in the database when the file has been uploaded
+     */
+    @Column(name = "FIL_SIZE_N", nullable = false)
+    private Long size;
+
     /**
      * Private key to decrypt the file.
      * Not saved to database, of course.
@@ -205,6 +212,18 @@ public class File implements Loggable {
         return this;
     }
 
+    /**
+     * Can return {@link File#UNKNOWN_SIZE} if the file size is not stored in the database.
+     */
+    public Long getSize() {
+        return size;
+    }
+
+    public File setSize(Long size) {
+        this.size = size;
+        return this;
+    }
+
     @Override
     public String toString() {
         return MoreObjects.toStringHelper(this)

docs-core/src/main/java/com/sismics/docs/core/model/jpa/Group.java

@@ -2,10 +2,10 @@ package com.sismics.docs.core.model.jpa;
 
 import java.util.Date;
 
-import javax.persistence.Column;
-import javax.persistence.Entity;
-import javax.persistence.Id;
-import javax.persistence.Table;
+import jakarta.persistence.Column;
+import jakarta.persistence.Entity;
+import jakarta.persistence.Id;
+import jakarta.persistence.Table;
 
 import com.google.common.base.MoreObjects;
 

docs-core/src/main/java/com/sismics/docs/core/model/jpa/Metadata.java

@@ -3,7 +3,7 @@ package com.sismics.docs.core.model.jpa;
 import com.google.common.base.MoreObjects;
 import com.sismics.docs.core.constant.MetadataType;
 
-import javax.persistence.*;
+import jakarta.persistence.*;
 import java.util.Date;
 
 /**

docs-core/src/main/java/com/sismics/docs/core/model/jpa/PasswordRecovery.java

@@ -2,10 +2,10 @@ package com.sismics.docs.core.model.jpa;
 
 import com.google.common.base.MoreObjects;
 
-import javax.persistence.Column;
-import javax.persistence.Entity;
-import javax.persistence.Id;
-import javax.persistence.Table;
+import jakarta.persistence.Column;
+import jakarta.persistence.Entity;
+import jakarta.persistence.Id;
+import jakarta.persistence.Table;
 import java.util.Date;
 
 /**

docs-core/src/main/java/com/sismics/docs/core/model/jpa/Relation.java

@@ -2,10 +2,10 @@ package com.sismics.docs.core.model.jpa;
 
 import java.util.Date;
 
-import javax.persistence.Column;
-import javax.persistence.Entity;
-import javax.persistence.Id;
-import javax.persistence.Table;
+import jakarta.persistence.Column;
+import jakarta.persistence.Entity;
+import jakarta.persistence.Id;
+import jakarta.persistence.Table;
 
 import com.google.common.base.MoreObjects;
 

docs-core/src/main/java/com/sismics/docs/core/model/jpa/Role.java

@@ -2,10 +2,10 @@ package com.sismics.docs.core.model.jpa;
 
 import java.util.Date;
 
-import javax.persistence.Column;
-import javax.persistence.Entity;
-import javax.persistence.Id;
-import javax.persistence.Table;
+import jakarta.persistence.Column;
+import jakarta.persistence.Entity;
+import jakarta.persistence.Id;
+import jakarta.persistence.Table;
 
 import com.google.common.base.MoreObjects;
 

docs-core/src/main/java/com/sismics/docs/core/model/jpa/RoleBaseFunction.java

@@ -2,10 +2,10 @@ package com.sismics.docs.core.model.jpa;
 
 import java.util.Date;
 
-import javax.persistence.Column;
-import javax.persistence.Entity;
-import javax.persistence.Id;
-import javax.persistence.Table;
+import jakarta.persistence.Column;
+import jakarta.persistence.Entity;
+import jakarta.persistence.Id;
+import jakarta.persistence.Table;
 
 import com.google.common.base.MoreObjects;
 

docs-core/src/main/java/com/sismics/docs/core/model/jpa/Route.java

@@ -2,10 +2,10 @@ package com.sismics.docs.core.model.jpa;
 
 import com.google.common.base.MoreObjects;
 
-import javax.persistence.Column;
-import javax.persistence.Entity;
-import javax.persistence.Id;
-import javax.persistence.Table;
+import jakarta.persistence.Column;
+import jakarta.persistence.Entity;
+import jakarta.persistence.Id;
+import jakarta.persistence.Table;
 import java.util.Date;
 
 /**

docs-core/src/main/java/com/sismics/docs/core/model/jpa/RouteModel.java

@@ -2,10 +2,10 @@ package com.sismics.docs.core.model.jpa;
 
 import com.google.common.base.MoreObjects;
 
-import javax.persistence.Column;
-import javax.persistence.Entity;
-import javax.persistence.Id;
-import javax.persistence.Table;
+import jakarta.persistence.Column;
+import jakarta.persistence.Entity;
+import jakarta.persistence.Id;
+import jakarta.persistence.Table;
 import java.util.Date;
 
 /**

docs-core/src/main/java/com/sismics/docs/core/model/jpa/RouteStep.java

@@ -4,7 +4,7 @@ import com.google.common.base.MoreObjects;
 import com.sismics.docs.core.constant.RouteStepTransition;
 import com.sismics.docs.core.constant.RouteStepType;
 
-import javax.persistence.*;
+import jakarta.persistence.*;
 import java.util.Date;
 
 /**

docs-core/src/main/java/com/sismics/docs/core/model/jpa/Share.java

@@ -2,10 +2,10 @@ package com.sismics.docs.core.model.jpa;
 
 import java.util.Date;
 
-import javax.persistence.Column;
-import javax.persistence.Entity;
-import javax.persistence.Id;
-import javax.persistence.Table;
+import jakarta.persistence.Column;
+import jakarta.persistence.Entity;
+import jakarta.persistence.Id;
+import jakarta.persistence.Table;
 
 import com.google.common.base.MoreObjects;
 

docs-core/src/main/java/com/sismics/docs/core/model/jpa/Tag.java

@@ -2,10 +2,10 @@ package com.sismics.docs.core.model.jpa;
 
 import java.util.Date;
 
-import javax.persistence.Column;
-import javax.persistence.Entity;
-import javax.persistence.Id;
-import javax.persistence.Table;
+import jakarta.persistence.Column;
+import jakarta.persistence.Entity;
+import jakarta.persistence.Id;
+import jakarta.persistence.Table;
 
 import com.google.common.base.MoreObjects;
 

docs-core/src/main/java/com/sismics/docs/core/model/jpa/User.java

@@ -2,10 +2,10 @@ package com.sismics.docs.core.model.jpa;
 
 import com.google.common.base.MoreObjects;
 
-import javax.persistence.Column;
-import javax.persistence.Entity;
-import javax.persistence.Id;
-import javax.persistence.Table;
+import jakarta.persistence.Column;
+import jakarta.persistence.Entity;
+import jakarta.persistence.Id;
+import jakarta.persistence.Table;
 import java.util.Date;
 
 /**

docs-core/src/main/java/com/sismics/docs/core/model/jpa/UserGroup.java

@@ -3,10 +3,10 @@ package com.sismics.docs.core.model.jpa;
 import java.io.Serializable;
 import java.util.Date;
 
-import javax.persistence.Column;
-import javax.persistence.Entity;
-import javax.persistence.Id;
-import javax.persistence.Table;
+import jakarta.persistence.Column;
+import jakarta.persistence.Entity;
+import jakarta.persistence.Id;
+import jakarta.persistence.Table;
 
 import com.google.common.base.MoreObjects;
 

docs-core/src/main/java/com/sismics/docs/core/model/jpa/Vocabulary.java

@@ -1,9 +1,9 @@
 package com.sismics.docs.core.model.jpa;
 
-import javax.persistence.Column;
-import javax.persistence.Entity;
-import javax.persistence.Id;
-import javax.persistence.Table;
+import jakarta.persistence.Column;
+import jakarta.persistence.Entity;
+import jakarta.persistence.Id;
+import jakarta.persistence.Table;
 
 import com.google.common.base.MoreObjects;
 

docs-core/src/main/java/com/sismics/docs/core/model/jpa/Webhook.java

@@ -3,7 +3,7 @@ package com.sismics.docs.core.model.jpa;
 import com.google.common.base.MoreObjects;
 import com.sismics.docs.core.constant.WebhookEvent;
 
-import javax.persistence.*;
+import jakarta.persistence.*;
 import java.util.Date;
 
 /**

docs-core/src/main/java/com/sismics/docs/core/service/FileService.java

@@ -69,13 +69,18 @@ public class FileService extends AbstractScheduledService {
         return Scheduler.newFixedDelaySchedule(0, 5, TimeUnit.SECONDS);
     }
 
+    public Path createTemporaryFile() throws IOException {
+        return createTemporaryFile(null);
+    }
+
     /**
      * Create a temporary file.
      *
+     * @param name Wanted file name
      * @return New temporary file
      */
-    public Path createTemporaryFile() throws IOException {
-        Path path = Files.createTempFile("sismics_docs", null);
+    public Path createTemporaryFile(String name) throws IOException {
+        Path path = Files.createTempFile("sismics_docs", name);
         referenceSet.add(new TemporaryPathReference(path, referenceQueue));
         return path;
     }

docs-core/src/main/java/com/sismics/docs/core/service/FileSizeService.java

@@ -0,0 +1,78 @@
+package com.sismics.docs.core.service;
+
+import com.google.common.util.concurrent.AbstractScheduledService;
+import com.sismics.docs.core.dao.FileDao;
+import com.sismics.docs.core.dao.UserDao;
+import com.sismics.docs.core.model.jpa.File;
+import com.sismics.docs.core.model.jpa.User;
+import com.sismics.docs.core.util.FileUtil;
+import com.sismics.docs.core.util.TransactionUtil;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import java.util.List;
+import java.util.concurrent.TimeUnit;
+
+/**
+ * Service that retrieve files sizes when they are not in the database.
+ */
+public class FileSizeService extends AbstractScheduledService {
+    /**
+     * Logger.
+     */
+    private static final Logger log = LoggerFactory.getLogger(FileSizeService.class);
+
+    public FileSizeService() {
+    }
+
+    @Override
+    protected void startUp() {
+        log.info("File size service starting up");
+    }
+
+    @Override
+    protected void shutDown() {
+        log.info("File size service shutting down");
+    }
+
+    private static final int BATCH_SIZE = 30;
+    
+    @Override
+    protected void runOneIteration() {
+        try {
+            TransactionUtil.handle(() -> {
+                FileDao fileDao = new FileDao();
+                List<File> files = fileDao.getFilesWithUnknownSize(BATCH_SIZE);
+                for(File file : files) {
+                    processFile(file);
+                }
+                if(files.size() < BATCH_SIZE) {
+                    log.info("No more file to process, stopping the service");
+                    stopAsync();
+                }
+            });
+        } catch (Throwable e) {
+            log.error("Exception during file service iteration", e);
+        }
+    }
+
+    void processFile(File file) {
+        UserDao userDao = new UserDao();
+        User user = userDao.getById(file.getUserId());
+        if(user == null) {
+            return;
+        }
+
+        long fileSize = FileUtil.getFileSize(file.getId(), user);
+        if(fileSize != File.UNKNOWN_SIZE){
+            FileDao fileDao = new FileDao();
+            file.setSize(fileSize);
+            fileDao.update(file);
+        }
+    }
+
+    @Override
+    protected Scheduler scheduler() {
+        return Scheduler.newFixedDelaySchedule(0, 1, TimeUnit.MINUTES);
+    }
+}

docs-core/src/main/java/com/sismics/docs/core/service/InboxService.java

@@ -1,9 +1,10 @@
 package com.sismics.docs.core.service;
 
-import com.google.common.collect.Sets;
 import com.google.common.util.concurrent.AbstractScheduledService;
 import com.sismics.docs.core.constant.ConfigType;
 import com.sismics.docs.core.dao.TagDao;
+import com.sismics.docs.core.dao.criteria.TagCriteria;
+import com.sismics.docs.core.dao.dto.TagDto;
 import com.sismics.docs.core.event.DocumentCreatedAsyncEvent;
 import com.sismics.docs.core.model.jpa.Document;
 import com.sismics.docs.core.model.jpa.Tag;
@@ -11,17 +12,19 @@ import com.sismics.docs.core.util.ConfigUtil;
 import com.sismics.docs.core.util.DocumentUtil;
 import com.sismics.docs.core.util.FileUtil;
 import com.sismics.docs.core.util.TransactionUtil;
+import com.sismics.docs.core.util.jpa.SortCriteria;
 import com.sismics.util.EmailUtil;
 import com.sismics.util.context.ThreadLocalContext;
-import org.apache.commons.lang.StringUtils;
+import org.apache.commons.lang3.StringUtils;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
 import javax.mail.*;
 import javax.mail.search.FlagTerm;
-import java.util.Date;
-import java.util.Properties;
+import java.util.*;
 import java.util.concurrent.TimeUnit;
+import java.util.regex.Matcher;
+import java.util.regex.Pattern;
 
 /**
  * Inbox scanning service.
@@ -79,22 +82,25 @@ public class InboxService extends AbstractScheduledService {
             lastSyncDate = new Date();
             lastSyncMessageCount = 0;
             try {
+                Map<String, String> tagsNameToId = getAllTags();
+
                 inbox = openInbox();
                 Message[] messages = inbox.search(new FlagTerm(new Flags(Flags.Flag.SEEN), false));
                 log.info(messages.length + " messages found");
                 for (Message message : messages) {
-                    importMessage(message);
+                    importMessage(message, tagsNameToId);
                     lastSyncMessageCount++;
                 }
             } catch (FolderClosedException e) {
                 // Ignore this, we will just continue importing on the next cycle
             } catch (Exception e) {
-                log.error("Error synching the inbox", e);
+                log.error("Error syncing the inbox", e);
                 lastSyncError = e.getMessage();
             } finally {
                 try {
                     if (inbox != null) {
-                        inbox.close(false);
+                        // The parameter controls if the messages flagged to be deleted, should actually get deleted.
+                        inbox.close(ConfigUtil.getConfigBooleanValue(ConfigType.INBOX_DELETE_IMPORTED));
                         inbox.getStore().close();
                     }
                 } catch (Exception e) {
@@ -150,6 +156,7 @@ public class InboxService extends AbstractScheduledService {
         String port = ConfigUtil.getConfigStringValue(ConfigType.INBOX_PORT);
         properties.put("mail.imap.host", ConfigUtil.getConfigStringValue(ConfigType.INBOX_HOSTNAME));
         properties.put("mail.imap.port", port);
+        properties.setProperty("mail.imap.starttls.enable", ConfigUtil.getConfigStringValue(ConfigType.INBOX_STARTTLS).toString());
         boolean isSsl = "993".equals(port);
         properties.put("mail.imap.ssl.enable", String.valueOf(isSsl));
         properties.setProperty("mail.imap.socketFactory.class",
@@ -172,7 +179,7 @@ public class InboxService extends AbstractScheduledService {
         store.connect(ConfigUtil.getConfigStringValue(ConfigType.INBOX_USERNAME),
                 ConfigUtil.getConfigStringValue(ConfigType.INBOX_PASSWORD));
 
-        Folder inbox = store.getFolder("INBOX");
+        Folder inbox = store.getFolder(ConfigUtil.getConfigStringValue(ConfigType.INBOX_FOLDER));
         inbox.open(Folder.READ_WRITE);
         return inbox;
     }
@@ -183,7 +190,7 @@ public class InboxService extends AbstractScheduledService {
      * @param message Message
      * @throws Exception e
      */
-    private void importMessage(Message message) throws Exception {
+    private void importMessage(Message message, Map<String, String> tags) throws Exception {
         log.info("Importing message: " + message.getSubject());
 
         // Parse the mail
@@ -194,12 +201,27 @@ public class InboxService extends AbstractScheduledService {
 
         // Create the document
         Document document = new Document();
-        document.setUserId("admin");
-        if (mailContent.getSubject() == null) {
-            document.setTitle("Imported email from EML file");
-        } else {
-            document.setTitle(StringUtils.abbreviate(mailContent.getSubject(), 100));
+        String subject = mailContent.getSubject();
+        if (subject == null) {
+            subject = "Imported email from EML file";
         }
+
+        HashSet<String> tagsFound = new HashSet<>();
+        if (tags != null) {
+            Pattern pattern = Pattern.compile("#([^\\s:#]+)");
+            Matcher matcher = pattern.matcher(subject);
+            while (matcher.find()) {
+                if (tags.containsKey(matcher.group(1)) && tags.get(matcher.group(1)) != null) {
+                    tagsFound.add(tags.get(matcher.group(1)));
+                    subject = subject.replaceFirst("#" + matcher.group(1), "");
+                }
+            }
+            log.debug("Tags found: " + String.join(", ", tagsFound));
+            subject = subject.trim().replaceAll(" +", " ");
+        }
+
+        document.setUserId("admin");
+        document.setTitle(StringUtils.abbreviate(subject, 100));
         document.setDescription(StringUtils.abbreviate(mailContent.getMessage(), 4000));
         document.setSubject(StringUtils.abbreviate(mailContent.getSubject(), 500));
         document.setFormat("EML");
@@ -220,14 +242,19 @@ public class InboxService extends AbstractScheduledService {
             TagDao tagDao = new TagDao();
             Tag tag = tagDao.getById(tagId);
             if (tag != null) {
-                tagDao.updateTagList(document.getId(), Sets.newHashSet(tagId));
+                tagsFound.add(tagId);
             }
         }
 
+        // Update tags
+        if (!tagsFound.isEmpty()) {
+            new TagDao().updateTagList(document.getId(), tagsFound);
+        }
+
         // Raise a document created event
         DocumentCreatedAsyncEvent documentCreatedAsyncEvent = new DocumentCreatedAsyncEvent();
         documentCreatedAsyncEvent.setUserId("admin");
-        documentCreatedAsyncEvent.setDocument(document);
+        documentCreatedAsyncEvent.setDocumentId(document.getId());
         ThreadLocalContext.get().addAsyncEvent(documentCreatedAsyncEvent);
 
         // Add files to the document
@@ -235,6 +262,29 @@ public class InboxService extends AbstractScheduledService {
             FileUtil.createFile(fileContent.getName(), null, fileContent.getFile(), fileContent.getSize(),
                     document.getLanguage(), "admin", document.getId());
         }
+
+        if (ConfigUtil.getConfigBooleanValue(ConfigType.INBOX_DELETE_IMPORTED)) {
+            message.setFlag(Flags.Flag.DELETED, true);
+        }
+    }
+
+    /**
+     * Fetches a HashMap with all tag names as keys and their respective ids as values.
+     *
+     * @return Map with all tags or null if not enabled
+     */
+    private Map<String, String> getAllTags() {
+        if (!ConfigUtil.getConfigBooleanValue(ConfigType.INBOX_AUTOMATIC_TAGS)) {
+            return null;
+        }
+        TagDao tagDao = new TagDao();
+        List<TagDto> tags = tagDao.findByCriteria(new TagCriteria().setTargetIdList(null), new SortCriteria(1, true));
+
+        Map<String, String> tagsNameToId = new HashMap<>();
+        for (TagDto tagDto : tags) {
+            tagsNameToId.put(tagDto.getName(), tagDto.getId());
+        }
+        return tagsNameToId;
     }
 
     public Date getLastSyncDate() {

docs-core/src/main/java/com/sismics/docs/core/util/ActionUtil.java

@@ -9,7 +9,7 @@ import com.sismics.docs.core.util.action.RemoveTagAction;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
-import javax.json.JsonObject;
+import jakarta.json.JsonObject;
 
 /**
  * Action utilities.

docs-core/src/main/java/com/sismics/docs/core/util/AuditLogUtil.java

@@ -6,7 +6,7 @@ import com.sismics.docs.core.model.jpa.AuditLog;
 import com.sismics.docs.core.model.jpa.Loggable;
 import com.sismics.util.context.ThreadLocalContext;
 
-import javax.persistence.EntityManager;
+import jakarta.persistence.EntityManager;
 
 /**
  * Audit log utilities.

docs-core/src/main/java/com/sismics/docs/core/util/ConfigUtil.java

@@ -9,7 +9,6 @@ import java.util.ResourceBundle;
 /**
  * Configuration parameter utilities.
  *
- * @author jtremeaux
  */
 public class ConfigUtil {
     /**
@@ -50,6 +49,19 @@ public class ConfigUtil {
         return Integer.parseInt(value);
     }
 
+    /**
+     * Returns the long value of a configuration parameter.
+     *
+     * @param configType Type of the configuration parameter
+     * @return Long value of the configuration parameter
+     * @throws IllegalStateException Configuration parameter undefined
+     */
+    public static long getConfigLongValue(ConfigType configType) {
+        String value = getConfigStringValue(configType);
+
+        return Long.parseLong(value);
+    }
+
     /**
      * Returns the boolean value of a configuration parameter.
      *
@@ -59,7 +71,21 @@ public class ConfigUtil {
      */
     public static boolean getConfigBooleanValue(ConfigType configType) {
         String value = getConfigStringValue(configType);
-        
         return Boolean.parseBoolean(value);
     }
+
+    /**
+     * Returns the boolean value of a configuration parameter with a default value.
+     *
+     * @param configType Type of the configuration parameter
+     * @param defaultValue Default value to return if the configuration parameter is undefined
+     * @return Boolean value of the configuration parameter
+     */
+    public static boolean getConfigBooleanValue(ConfigType configType, boolean defaultValue) {
+        try {
+            return getConfigBooleanValue(configType);
+        } catch (IllegalStateException e) {
+            return defaultValue;
+        }
+    }
 }

docs-core/src/main/java/com/sismics/docs/core/util/DirectoryUtil.java

@@ -5,7 +5,7 @@ import java.nio.file.Files;
 import java.nio.file.Path;
 import java.nio.file.Paths;
 
-import org.apache.commons.lang.StringUtils;
+import org.apache.commons.lang3.StringUtils;
 
 import com.sismics.util.EnvironmentUtil;
 

docs-core/src/main/java/com/sismics/docs/core/util/FileUtil.java

@@ -1,6 +1,5 @@
 package com.sismics.docs.core.util;
 
-import com.google.common.base.Charsets;
 import com.google.common.base.Strings;
 import com.google.common.collect.Lists;
 import com.google.common.io.CharStreams;
@@ -17,7 +16,12 @@ import com.sismics.util.Scalr;
 import com.sismics.util.context.ThreadLocalContext;
 import com.sismics.util.io.InputStreamReaderThread;
 import com.sismics.util.mime.MimeTypeUtil;
-import org.apache.commons.lang.StringUtils;
+import org.apache.commons.io.IOUtils;
+import org.apache.commons.io.input.CountingInputStream;
+import org.apache.commons.io.output.NullOutputStream;
+import org.apache.commons.lang3.StringUtils;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
 
 import javax.crypto.Cipher;
 import javax.crypto.CipherInputStream;
@@ -26,6 +30,7 @@ import java.awt.image.BufferedImage;
 import java.io.IOException;
 import java.io.InputStream;
 import java.io.InputStreamReader;
+import java.nio.charset.StandardCharsets;
 import java.nio.file.Files;
 import java.nio.file.Path;
 import java.util.*;
@@ -36,10 +41,15 @@ import java.util.*;
  * @author bgamard
  */
 public class FileUtil {
+    /**
+     * Logger.
+     */
+    private static final Logger log = LoggerFactory.getLogger(FileUtil.class);
+
     /**
      * File ID of files currently being processed.
      */
-    private static Set<String> processingFileSet = Collections.synchronizedSet(new HashSet<>());
+    private static final Set<String> processingFileSet = Collections.synchronizedSet(new HashSet<>());
     
     /**
      * Optical character recognition on an image.
@@ -69,19 +79,19 @@ public class FileUtil {
 
         // Consume the data as text
         try (InputStream is = process.getInputStream()) {
-            return CharStreams.toString(new InputStreamReader(is, Charsets.UTF_8));
+            return CharStreams.toString(new InputStreamReader(is, StandardCharsets.UTF_8));
         }
     }
 
     /**
      * Remove a file from the storage filesystem.
      * 
-     * @param file File to delete
+     * @param fileId ID of file to delete
      */
-    public static void delete(File file) throws IOException {
-        Path storedFile = DirectoryUtil.getStorageDirectory().resolve(file.getId());
-        Path webFile = DirectoryUtil.getStorageDirectory().resolve(file.getId() + "_web");
-        Path thumbnailFile = DirectoryUtil.getStorageDirectory().resolve(file.getId() + "_thumb");
+    public static void delete(String fileId) throws IOException {
+        Path storedFile = DirectoryUtil.getStorageDirectory().resolve(fileId);
+        Path webFile = DirectoryUtil.getStorageDirectory().resolve(fileId + "_web");
+        Path thumbnailFile = DirectoryUtil.getStorageDirectory().resolve(fileId + "_thumb");
         
         if (Files.exists(storedFile)) {
             Files.delete(storedFile);
@@ -126,7 +136,7 @@ public class FileUtil {
         // Validate global quota
         String globalStorageQuotaStr = System.getenv(Constants.GLOBAL_QUOTA_ENV);
         if (!Strings.isNullOrEmpty(globalStorageQuotaStr)) {
-            long globalStorageQuota = Long.valueOf(globalStorageQuotaStr);
+            long globalStorageQuota = Long.parseLong(globalStorageQuotaStr);
             long globalStorageCurrent = userDao.getGlobalStorageCurrent();
             if (globalStorageCurrent + fileSize > globalStorageQuota) {
                 throw new IOException("QuotaReached");
@@ -142,6 +152,7 @@ public class FileUtil {
         file.setName(StringUtils.abbreviate(name, 200));
         file.setMimeType(mimeType);
         file.setUserId(userId);
+        file.setSize(fileSize);
 
         // Get files of this document
         FileDao fileDao = new FileDao();
@@ -190,7 +201,7 @@ public class FileUtil {
         FileCreatedAsyncEvent fileCreatedAsyncEvent = new FileCreatedAsyncEvent();
         fileCreatedAsyncEvent.setUserId(userId);
         fileCreatedAsyncEvent.setLanguage(language);
-        fileCreatedAsyncEvent.setFile(file);
+        fileCreatedAsyncEvent.setFileId(file.getId());
         fileCreatedAsyncEvent.setUnencryptedFile(unencryptedFile);
         ThreadLocalContext.get().addAsyncEvent(fileCreatedAsyncEvent);
 
@@ -211,6 +222,7 @@ public class FileUtil {
      */
     public static void startProcessingFile(String fileId) {
         processingFileSet.add(fileId);
+        log.info("Processing started for file: " + fileId);
     }
 
     /**
@@ -220,6 +232,7 @@ public class FileUtil {
      */
     public static void endProcessingFile(String fileId) {
         processingFileSet.remove(fileId);
+        log.info("Processing ended for file: " + fileId);
     }
 
     /**
@@ -231,4 +244,31 @@ public class FileUtil {
     public static boolean isProcessingFile(String fileId) {
         return processingFileSet.contains(fileId);
     }
+
+    /**
+     * Get the size of a file on disk.
+     *
+     * @param fileId the file id
+     * @param user   the file owner
+     * @return the size or -1 if something went wrong
+     */
+    public static long getFileSize(String fileId, User user) {
+        // To get the size we copy the decrypted content into a null output stream
+        // and count the copied byte size.
+        Path storedFile = DirectoryUtil.getStorageDirectory().resolve(fileId);
+        if (! Files.exists(storedFile)) {
+            log.debug("File does not exist " + fileId);
+            return File.UNKNOWN_SIZE;
+        }
+        try (InputStream fileInputStream = Files.newInputStream(storedFile);
+             InputStream inputStream = EncryptionUtil.decryptInputStream(fileInputStream, user.getPrivateKey());
+             CountingInputStream countingInputStream = new CountingInputStream(inputStream);
+        ) {
+            IOUtils.copy(countingInputStream, NullOutputStream.NULL_OUTPUT_STREAM);
+            return countingInputStream.getByteCount();
+        } catch (Exception e) {
+            log.debug("Can't find size of file " + fileId, e);
+            return File.UNKNOWN_SIZE;
+        }
+    }
 }

docs-core/src/main/java/com/sismics/docs/core/util/MetadataUtil.java

@@ -10,9 +10,9 @@ import com.sismics.docs.core.dao.dto.MetadataDto;
 import com.sismics.docs.core.model.jpa.DocumentMetadata;
 import com.sismics.docs.core.util.jpa.SortCriteria;
 
-import javax.json.Json;
-import javax.json.JsonArrayBuilder;
-import javax.json.JsonObjectBuilder;
+import jakarta.json.Json;
+import jakarta.json.JsonArrayBuilder;
+import jakarta.json.JsonObjectBuilder;
 import java.text.MessageFormat;
 import java.util.List;
 import java.util.Map;

docs-core/src/main/java/com/sismics/docs/core/util/RoutingUtil.java

@@ -19,10 +19,10 @@ import com.sismics.docs.core.model.jpa.Document;
 import com.sismics.docs.core.model.jpa.RouteModel;
 import com.sismics.util.context.ThreadLocalContext;
 
-import javax.json.Json;
-import javax.json.JsonArray;
-import javax.json.JsonObject;
-import javax.json.JsonReader;
+import jakarta.json.Json;
+import jakarta.json.JsonArray;
+import jakarta.json.JsonObject;
+import jakarta.json.JsonReader;
 import java.io.StringReader;
 import java.util.List;
 

docs-core/src/main/java/com/sismics/docs/core/util/TransactionUtil.java

@@ -5,8 +5,8 @@ import com.sismics.util.jpa.EMF;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
-import javax.persistence.EntityManager;
-import javax.persistence.EntityTransaction;
+import jakarta.persistence.EntityManager;
+import jakarta.persistence.EntityTransaction;
 
 /**
  * Database transaction utils.

docs-core/src/main/java/com/sismics/docs/core/util/action/Action.java

@@ -2,7 +2,7 @@ package com.sismics.docs.core.util.action;
 
 import com.sismics.docs.core.dao.dto.DocumentDto;
 
-import javax.json.JsonObject;
+import jakarta.json.JsonObject;
 
 /**
  * Base action interface.

docs-core/src/main/java/com/sismics/docs/core/util/action/AddTagAction.java

@@ -6,7 +6,7 @@ import com.sismics.docs.core.dao.criteria.TagCriteria;
 import com.sismics.docs.core.dao.dto.DocumentDto;
 import com.sismics.docs.core.dao.dto.TagDto;
 
-import javax.json.JsonObject;
+import jakarta.json.JsonObject;
 import java.util.List;
 import java.util.Set;
 

docs-core/src/main/java/com/sismics/docs/core/util/action/ProcessFilesAction.java

@@ -13,7 +13,7 @@ import com.sismics.util.context.ThreadLocalContext;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
-import javax.json.JsonObject;
+import jakarta.json.JsonObject;
 import java.nio.file.Path;
 import java.util.List;
 
@@ -48,7 +48,7 @@ public class ProcessFilesAction implements Action {
                 FileUpdatedAsyncEvent event = new FileUpdatedAsyncEvent();
                 event.setUserId("admin");
                 event.setLanguage(documentDto.getLanguage());
-                event.setFile(file);
+                event.setFileId(file.getId());
                 event.setUnencryptedFile(unencryptedFile);
                 ThreadLocalContext.get().addAsyncEvent(event);
             }

docs-core/src/main/java/com/sismics/docs/core/util/action/RemoveTagAction.java

@@ -6,7 +6,7 @@ import com.sismics.docs.core.dao.criteria.TagCriteria;
 import com.sismics.docs.core.dao.dto.DocumentDto;
 import com.sismics.docs.core.dao.dto.TagDto;
 
-import javax.json.JsonObject;
+import jakarta.json.JsonObject;
 import java.util.List;
 import java.util.Set;
 

docs-core/src/main/java/com/sismics/docs/core/util/action/TagAction.java

@@ -4,7 +4,7 @@ import com.sismics.docs.core.dao.TagDao;
 import com.sismics.docs.core.dao.criteria.TagCriteria;
 import com.sismics.docs.core.dao.dto.TagDto;
 
-import javax.json.JsonObject;
+import jakarta.json.JsonObject;
 import java.util.List;
 
 /**

docs-core/src/main/java/com/sismics/docs/core/util/authentication/AuthenticationUtil.java

@@ -20,7 +20,7 @@ public class AuthenticationUtil {
 
                     .map(clazz -> {
                 try {
-                    return clazz.newInstance();
+                    return clazz.getDeclaredConstructor().newInstance();
                 } catch (Exception e) {
                     throw new RuntimeException(e);
                 }

docs-core/src/main/java/com/sismics/docs/core/util/authentication/LdapAuthenticationHandler.java

@@ -0,0 +1,108 @@
+package com.sismics.docs.core.util.authentication;
+
+import com.sismics.docs.core.constant.ConfigType;
+import com.sismics.docs.core.constant.Constants;
+import com.sismics.docs.core.dao.ConfigDao;
+import com.sismics.docs.core.dao.UserDao;
+import com.sismics.docs.core.model.jpa.Config;
+import com.sismics.docs.core.model.jpa.User;
+import com.sismics.docs.core.util.ConfigUtil;
+import com.sismics.util.ClasspathScanner;
+import org.apache.directory.api.ldap.model.cursor.EntryCursor;
+import org.apache.directory.api.ldap.model.entry.Attribute;
+import org.apache.directory.api.ldap.model.entry.Entry;
+import org.apache.directory.api.ldap.model.entry.Value;
+import org.apache.directory.api.ldap.model.message.SearchScope;
+import org.apache.directory.ldap.client.api.LdapConnection;
+import org.apache.directory.ldap.client.api.LdapConnectionConfig;
+import org.apache.directory.ldap.client.api.LdapNetworkConnection;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import java.util.UUID;
+
+/**
+ * LDAP authentication handler.
+ *
+ * @author bgamard
+ */
+@ClasspathScanner.Priority(50) // Before the internal database
+public class LdapAuthenticationHandler implements AuthenticationHandler {
+    /**
+     * Logger.
+     */
+    private static final Logger log = LoggerFactory.getLogger(LdapAuthenticationHandler.class);
+
+    /**
+     * Get a LDAP connection.
+     * @return LdapConnection
+     */
+    private LdapConnection getConnection() {
+        ConfigDao configDao = new ConfigDao();
+        Config ldapEnabled = configDao.getById(ConfigType.LDAP_ENABLED);
+        if (ldapEnabled == null || !Boolean.parseBoolean(ldapEnabled.getValue())) {
+            return null;
+        }
+
+        LdapConnectionConfig config = new LdapConnectionConfig();
+        config.setLdapHost(ConfigUtil.getConfigStringValue(ConfigType.LDAP_HOST));
+        config.setLdapPort(ConfigUtil.getConfigIntegerValue(ConfigType.LDAP_PORT));
+        config.setUseSsl(ConfigUtil.getConfigBooleanValue(ConfigType.LDAP_USESSL));
+        config.setName(ConfigUtil.getConfigStringValue(ConfigType.LDAP_ADMIN_DN));
+        config.setCredentials(ConfigUtil.getConfigStringValue(ConfigType.LDAP_ADMIN_PASSWORD));
+
+        return new LdapNetworkConnection(config);
+    }
+
+    @Override
+    public User authenticate(String username, String password) {
+        // Fetch and authenticate the user
+        Entry userEntry;
+        try (LdapConnection ldapConnection = getConnection()) {
+            if (ldapConnection == null) {
+                return null;
+            }
+            ldapConnection.bind();
+
+            EntryCursor cursor = ldapConnection.search(ConfigUtil.getConfigStringValue(ConfigType.LDAP_BASE_DN),
+                    ConfigUtil.getConfigStringValue(ConfigType.LDAP_FILTER).replace("USERNAME", username), SearchScope.SUBTREE);
+            if (cursor.next()) {
+                userEntry = cursor.get();
+                ldapConnection.bind(userEntry.getDn(), password);
+            } else {
+                // User not found
+                return null;
+            }
+        } catch (Exception e) {
+            log.error("Error authenticating \"" + username + "\" using the LDAP", e);
+            return null;
+        }
+
+        UserDao userDao = new UserDao();
+        User user = userDao.getActiveByUsername(username);
+        if (user == null) {
+            // The user is valid but never authenticated, create the user now
+            log.info("\"" + username + "\" authenticated for the first time, creating the internal user");
+            user = new User();
+            user.setRoleId(Constants.DEFAULT_USER_ROLE);
+            user.setUsername(username);
+            user.setPassword(UUID.randomUUID().toString()); // No authentication using the internal database
+            Attribute mailAttribute = userEntry.get("mail");
+            if (mailAttribute == null || mailAttribute.get() == null) {
+                user.setEmail(ConfigUtil.getConfigStringValue(ConfigType.LDAP_DEFAULT_EMAIL));
+            } else {
+                Value value = mailAttribute.get();
+                user.setEmail(value.getString());
+            }
+            user.setStorageQuota(ConfigUtil.getConfigLongValue(ConfigType.LDAP_DEFAULT_STORAGE));
+            try {
+                userDao.create(user, "admin");
+            } catch (Exception e) {
+                log.error("Error while creating the internal user", e);
+                return null;
+            }
+        }
+
+        return user;
+    }
+}

docs-core/src/main/java/com/sismics/docs/core/util/format/FormatHandlerUtil.java

@@ -26,12 +26,12 @@ public class FormatHandlerUtil {
     public static FormatHandler find(String mimeType) {
         try {
             for (Class<? extends FormatHandler> formatHandlerClass : FORMAT_HANDLERS) {
-                FormatHandler formatHandler = formatHandlerClass.newInstance();
+                FormatHandler formatHandler = formatHandlerClass.getDeclaredConstructor().newInstance();
                 if (formatHandler.accept(mimeType)) {
                     return formatHandler;
                 }
             }
-        } catch (InstantiationException | IllegalAccessException e) {
+        } catch (Exception e) {
             return null;
         }
 

docs-core/src/main/java/com/sismics/docs/core/util/format/ImageFormatHandler.java

@@ -3,6 +3,8 @@ package com.sismics.docs.core.util.format;
 import com.google.common.io.Closer;
 import com.sismics.docs.core.constant.Constants;
 import com.sismics.docs.core.util.FileUtil;
+import com.sismics.docs.core.util.ConfigUtil;
+import com.sismics.docs.core.constant.ConfigType;
 import com.sismics.util.mime.MimeType;
 import org.apache.pdfbox.io.MemoryUsageSetting;
 import org.apache.pdfbox.pdmodel.PDDocument;
@@ -22,7 +24,6 @@ import java.nio.file.Path;
 /**
  * Image format handler.
  *
- * @author bgamard
  */
 public class ImageFormatHandler implements FormatHandler {
     /**
@@ -45,7 +46,7 @@ public class ImageFormatHandler implements FormatHandler {
 
     @Override
     public String extractContent(String language, Path file) throws Exception {
-        if (language == null) {
+        if (language == null || !ConfigUtil.getConfigBooleanValue(ConfigType.OCR_ENABLED, true)) {
             return null;
         }
 

docs-core/src/main/java/com/sismics/docs/core/util/format/PdfFormatHandler.java

@@ -2,6 +2,8 @@ package com.sismics.docs.core.util.format;
 
 import com.google.common.io.Closer;
 import com.sismics.docs.core.util.FileUtil;
+import com.sismics.docs.core.util.ConfigUtil;
+import com.sismics.docs.core.constant.ConfigType;
 import com.sismics.util.mime.MimeType;
 import org.apache.pdfbox.io.MemoryUsageSetting;
 import org.apache.pdfbox.multipdf.PDFMergerUtility;
@@ -53,7 +55,7 @@ public class PdfFormatHandler implements FormatHandler {
         }
 
         // No text content, try to OCR it
-        if (language != null && content != null && content.trim().isEmpty()) {
+        if (language != null && content != null && content.trim().isEmpty() && ConfigUtil.getConfigBooleanValue(ConfigType.OCR_ENABLED, true)) {
             StringBuilder sb = new StringBuilder();
             try (InputStream inputStream = Files.newInputStream(file);
                  PDDocument pdfDocument = PDDocument.load(inputStream)) {

docs-core/src/main/java/com/sismics/docs/core/util/format/PptxFormatHandler.java

@@ -9,7 +9,7 @@ import org.apache.pdfbox.pdmodel.PDPageContentStream;
 import org.apache.pdfbox.pdmodel.common.PDRectangle;
 import org.apache.pdfbox.pdmodel.graphics.image.LosslessFactory;
 import org.apache.pdfbox.pdmodel.graphics.image.PDImageXObject;
-import org.apache.poi.xslf.extractor.XSLFPowerPointExtractor;
+import org.apache.poi.sl.extractor.SlideShowExtractor;
 import org.apache.poi.xslf.usermodel.XMLSlideShow;
 import org.apache.poi.xslf.usermodel.XSLFSlide;
 
@@ -50,7 +50,7 @@ public class PptxFormatHandler implements FormatHandler {
     @Override
     public String extractContent(String language, Path file) throws Exception {
         XMLSlideShow pptx = loadPPtxFile(file);
-        return new XSLFPowerPointExtractor(pptx).getText();
+        return new SlideShowExtractor<>(pptx).getText();
     }
 
     @Override

docs-core/src/main/java/com/sismics/docs/core/util/format/TextPlainFormatHandler.java

@@ -1,6 +1,5 @@
 package com.sismics.docs.core.util.format;
 
-import com.google.common.base.Charsets;
 import com.google.common.io.Closer;
 import com.lowagie.text.*;
 import com.lowagie.text.pdf.PdfWriter;
@@ -11,6 +10,7 @@ import org.apache.pdfbox.pdmodel.PDDocument;
 
 import java.awt.image.BufferedImage;
 import java.io.OutputStream;
+import java.nio.charset.StandardCharsets;
 import java.nio.file.Files;
 import java.nio.file.Path;
 
@@ -33,7 +33,7 @@ public class TextPlainFormatHandler implements FormatHandler {
         PdfWriter.getInstance(output, pdfOutputStream);
 
         output.open();
-        String content = new String(Files.readAllBytes(file), Charsets.UTF_8);
+        String content = Files.readString(file, StandardCharsets.UTF_8);
         Font font = FontFactory.getFont("LiberationMono-Regular");
         Paragraph paragraph = new Paragraph(content, font);
         paragraph.setAlignment(Element.ALIGN_LEFT);
@@ -46,7 +46,7 @@ public class TextPlainFormatHandler implements FormatHandler {
 
     @Override
     public String extractContent(String language, Path file) throws Exception {
-        return new String(Files.readAllBytes(file), "UTF-8");
+        return Files.readString(file, StandardCharsets.UTF_8);
     }
 
     @Override

docs-core/src/main/java/com/sismics/docs/core/util/format/VideoFormatHandler.java

@@ -1,6 +1,5 @@
 package com.sismics.docs.core.util.format;
 
-import com.google.common.base.Charsets;
 import com.google.common.collect.Lists;
 import com.google.common.io.ByteStreams;
 import com.google.common.io.Closer;
@@ -13,6 +12,7 @@ import javax.imageio.ImageIO;
 import java.awt.image.BufferedImage;
 import java.io.IOException;
 import java.io.InputStream;
+import java.nio.charset.StandardCharsets;
 import java.nio.file.Path;
 import java.util.Arrays;
 import java.util.List;
@@ -65,7 +65,7 @@ public class VideoFormatHandler implements FormatHandler {
 
         // Consume the data as a string
         try (InputStream is = process.getInputStream()) {
-            return new String(ByteStreams.toByteArray(is), Charsets.UTF_8);
+            return new String(ByteStreams.toByteArray(is), StandardCharsets.UTF_8);
         } catch (Exception e) {
             return null;
         }

docs-core/src/main/java/com/sismics/docs/core/util/indexing/LuceneIndexingHandler.java

@@ -26,9 +26,18 @@ import org.apache.lucene.analysis.standard.StandardAnalyzer;
 import org.apache.lucene.document.Field;
 import org.apache.lucene.document.StringField;
 import org.apache.lucene.document.TextField;
-import org.apache.lucene.index.*;
+import org.apache.lucene.index.CheckIndex;
+import org.apache.lucene.index.ConcurrentMergeScheduler;
+import org.apache.lucene.index.DirectoryReader;
+import org.apache.lucene.index.IndexWriter;
+import org.apache.lucene.index.IndexWriterConfig;
+import org.apache.lucene.index.Term;
 import org.apache.lucene.queryparser.simple.SimpleQueryParser;
-import org.apache.lucene.search.*;
+import org.apache.lucene.search.BooleanClause;
+import org.apache.lucene.search.BooleanQuery;
+import org.apache.lucene.search.IndexSearcher;
+import org.apache.lucene.search.ScoreDoc;
+import org.apache.lucene.search.TopDocs;
 import org.apache.lucene.search.highlight.Highlighter;
 import org.apache.lucene.search.highlight.QueryScorer;
 import org.apache.lucene.search.highlight.SimpleHTMLEncoder;
@@ -37,9 +46,9 @@ import org.apache.lucene.search.spell.LuceneDictionary;
 import org.apache.lucene.search.suggest.Lookup;
 import org.apache.lucene.search.suggest.analyzing.FuzzySuggester;
 import org.apache.lucene.store.Directory;
+import org.apache.lucene.store.NIOFSDirectory;
 import org.apache.lucene.store.NoLockFactory;
 import org.apache.lucene.store.RAMDirectory;
-import org.apache.lucene.store.SimpleFSDirectory;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
@@ -47,7 +56,12 @@ import java.io.IOException;
 import java.nio.file.Files;
 import java.nio.file.Path;
 import java.sql.Timestamp;
-import java.util.*;
+import java.util.ArrayList;
+import java.util.Comparator;
+import java.util.HashMap;
+import java.util.List;
+import java.util.Map;
+import java.util.UUID;
 
 /**
  * Lucene indexing handler.
@@ -116,7 +130,7 @@ public class LuceneIndexingHandler implements IndexingHandler {
         } else if (luceneStorage.equals("FILE")) {
             Path luceneDirectory = DirectoryUtil.getLuceneDirectory();
             log.info("Using file Lucene storage: {}", luceneDirectory);
-            directory = new SimpleFSDirectory(luceneDirectory, NoLockFactory.INSTANCE);
+            directory = new NIOFSDirectory(luceneDirectory, NoLockFactory.INSTANCE);
         }
 
         // Create an index writer
@@ -242,23 +256,18 @@ public class LuceneIndexingHandler implements IndexingHandler {
 
         StringBuilder sb = new StringBuilder("select distinct d.DOC_ID_C c0, d.DOC_TITLE_C c1, d.DOC_DESCRIPTION_C c2, d.DOC_CREATEDATE_D c3, d.DOC_LANGUAGE_C c4, d.DOC_IDFILE_C, ");
         sb.append(" s.count c5, ");
-        sb.append(" f.count c6, ");
         sb.append(" rs2.RTP_ID_C c7, rs2.RTP_NAME_C, d.DOC_UPDATEDATE_D c8 ");
         sb.append(" from T_DOCUMENT d ");
         sb.append(" left join (SELECT count(s.SHA_ID_C) count, ac.ACL_SOURCEID_C " +
                 "   FROM T_SHARE s, T_ACL ac " +
                 "   WHERE ac.ACL_TARGETID_C = s.SHA_ID_C AND ac.ACL_DELETEDATE_D IS NULL AND " +
-                "         s.SHA_DELETEDATE_D IS NULL group by ac.ACL_SOURCEID_C) s on s.ACL_SOURCEID_C = d.DOC_ID_C " +
-                "  left join (SELECT count(f.FIL_ID_C) count, f.FIL_IDDOC_C " +
-                "   FROM T_FILE f " +
-                "   WHERE f.FIL_DELETEDATE_D is null group by f.FIL_IDDOC_C) f on f.FIL_IDDOC_C = d.DOC_ID_C ");
+                "         s.SHA_DELETEDATE_D IS NULL group by ac.ACL_SOURCEID_C) s on s.ACL_SOURCEID_C = d.DOC_ID_C ");
         sb.append(" left join (select rs.*, rs3.idDocument " +
                 "from T_ROUTE_STEP rs " +
                 "join (select r.RTE_IDDOCUMENT_C idDocument, rs.RTP_IDROUTE_C idRoute, min(rs.RTP_ORDER_N) minOrder from T_ROUTE_STEP rs join T_ROUTE r on r.RTE_ID_C = rs.RTP_IDROUTE_C and r.RTE_DELETEDATE_D is null where rs.RTP_DELETEDATE_D is null and rs.RTP_ENDDATE_D is null group by rs.RTP_IDROUTE_C, r.RTE_IDDOCUMENT_C) rs3 on rs.RTP_IDROUTE_C = rs3.idRoute and rs.RTP_ORDER_N = rs3.minOrder " +
                 "where rs.RTP_IDTARGET_C in (:targetIdList)) rs2 on rs2.idDocument = d.DOC_ID_C ");
 
         // Add search criterias
-        if (criteria.getTargetIdList() != null) {
         if (!SecurityUtil.skipAclCheck(criteria.getTargetIdList())) {
             // Read permission is enough for searching
             sb.append(" left join T_ACL a on a.ACL_TARGETID_C in (:targetIdList) and a.ACL_SOURCEID_C = d.DOC_ID_C and a.ACL_PERM_C = 'READ' and a.ACL_DELETEDATE_D is null ");
@@ -267,9 +276,8 @@ public class LuceneIndexingHandler implements IndexingHandler {
             criteriaList.add("(a.ACL_ID_C is not null or a2.ACL_ID_C is not null)");
         }
         parameterMap.put("targetIdList", criteria.getTargetIdList());
-        }
-        if (!Strings.isNullOrEmpty(criteria.getSearch()) || !Strings.isNullOrEmpty(criteria.getFullSearch())) {
-            documentSearchMap = search(criteria.getSearch(), criteria.getFullSearch());
+        if (!Strings.isNullOrEmpty(criteria.getSimpleSearch()) || !Strings.isNullOrEmpty(criteria.getFullSearch())) {
+            documentSearchMap = search(criteria.getSimpleSearch(), criteria.getFullSearch());
             if (documentSearchMap.isEmpty()) {
                 // If the search doesn't find any document, the request should return nothing
                 documentSearchMap.put(UUID.randomUUID().toString(), null);
@@ -277,7 +285,7 @@ public class LuceneIndexingHandler implements IndexingHandler {
             criteriaList.add("d.DOC_ID_C in :documentIdList");
             parameterMap.put("documentIdList", documentSearchMap.keySet());
 
-            suggestSearchTerms(criteria.getSearch(), suggestionList);
+            suggestSearchTerms(criteria.getFullSearch(), suggestionList);
         }
         if (criteria.getCreateDateMin() != null) {
             criteriaList.add("d.DOC_CREATEDATE_D >= :createDateMin");
@@ -295,7 +303,11 @@ public class LuceneIndexingHandler implements IndexingHandler {
             criteriaList.add("d.DOC_UPDATEDATE_D <= :updateDateMax");
             parameterMap.put("updateDateMax", criteria.getUpdateDateMax());
         }
-        if (criteria.getTagIdList() != null && !criteria.getTagIdList().isEmpty()) {
+        if (!criteria.getTitleList().isEmpty()) {
+            criteriaList.add("d.DOC_TITLE_C in :title");
+            parameterMap.put("title", criteria.getTitleList());
+        }
+        if (!criteria.getTagIdList().isEmpty()) {
             int index = 0;
             for (List<String> tagIdList : criteria.getTagIdList()) {
                 List<String> tagCriteriaList = Lists.newArrayList();
@@ -308,7 +320,7 @@ public class LuceneIndexingHandler implements IndexingHandler {
                 criteriaList.add("(" + Joiner.on(" OR ").join(tagCriteriaList) + ")");
             }
         }
-        if (criteria.getExcludedTagIdList() != null && !criteria.getExcludedTagIdList().isEmpty()) {
+        if (!criteria.getExcludedTagIdList().isEmpty()) {
             int index = 0;
             for (List<String> tagIdList : criteria.getExcludedTagIdList()) {
                 List<String> tagCriteriaList = Lists.newArrayList();
@@ -343,10 +355,8 @@ public class LuceneIndexingHandler implements IndexingHandler {
 
         criteriaList.add("d.DOC_DELETEDATE_D is null");
 
-        if (!criteriaList.isEmpty()) {
         sb.append(" where ");
         sb.append(Joiner.on(" and ").join(criteriaList));
-        }
 
         // Perform the search
         QueryParam queryParam = new QueryParam(sb.toString(), parameterMap);
@@ -365,8 +375,6 @@ public class LuceneIndexingHandler implements IndexingHandler {
             documentDto.setFileId((String) o[i++]);
             Number shareCount = (Number) o[i++];
             documentDto.setShared(shareCount != null && shareCount.intValue() > 0);
-            Number fileCount = (Number) o[i++];
-            documentDto.setFileCount(fileCount == null ? 0 : fileCount.intValue());
             documentDto.setActiveRoute(o[i++] != null);
             documentDto.setCurrentStepName((String) o[i++]);
             documentDto.setUpdateTimestamp(((Timestamp) o[i]).getTime());
@@ -404,14 +412,14 @@ public class LuceneIndexingHandler implements IndexingHandler {
     /**
      * Fulltext search in files and documents.
      *
-     * @param searchQuery Search query on metadatas
+     * @param simpleSearchQuery Search query on metadatas
      * @param fullSearchQuery Search query on all fields
      * @return Map of document IDs as key and highlight as value
      * @throws Exception e
      */
-    private Map<String, String> search(String searchQuery, String fullSearchQuery) throws Exception {
+    private Map<String, String> search(String simpleSearchQuery, String fullSearchQuery) throws Exception {
         // The fulltext query searches in all fields
-        searchQuery = searchQuery + " " + fullSearchQuery;
+        String searchQuery = simpleSearchQuery + " " + fullSearchQuery;
 
         // Build search query
         Analyzer analyzer = new StandardAnalyzer();

docs-core/src/main/java/com/sismics/docs/core/util/jpa/PaginatedLists.java

@@ -1,6 +1,6 @@
 package com.sismics.docs.core.util.jpa;
 
-import javax.persistence.Query;
+import jakarta.persistence.Query;
 import java.util.List;
 
 /**
@@ -68,7 +68,7 @@ public class PaginatedLists {
     }
 
     /**
-     * Executes a query and returns the data of the currunt page.
+     * Executes a query and returns the data of the current page.
      * 
      * @param paginatedList Paginated list object containing parameters, and into which results are added by side effects
      * @param queryParam Query parameters
@@ -83,18 +83,6 @@ public class PaginatedLists {
         return q.getResultList();
     }
 
-    /**
-     * Executes a paginated request with 2 native queries (one to count the number of results, and one to return the page).
-     * 
-     * @param paginatedList Paginated list object containing parameters, and into which results are added by side effects
-     * @param queryParam Query parameters
-     * @return List of results
-     */
-    public static <E> List<Object[]> executePaginatedQuery(PaginatedList<E> paginatedList, QueryParam queryParam) {
-        executeCountQuery(paginatedList, queryParam);
-        return executeResultQuery(paginatedList, queryParam);
-    }
-
     /**
      * Executes a paginated request with 2 native queries (one to count the number of results, and one to return the page).
      * 

docs-core/src/main/java/com/sismics/docs/core/util/jpa/QueryUtil.java

@@ -2,8 +2,8 @@ package com.sismics.docs.core.util.jpa;
 
 import java.util.Map.Entry;
 
-import javax.persistence.EntityManager;
-import javax.persistence.Query;
+import jakarta.persistence.EntityManager;
+import jakarta.persistence.Query;
 
 import com.sismics.util.context.ThreadLocalContext;
 

docs-core/src/main/java/com/sismics/util/EmailUtil.java

@@ -17,9 +17,9 @@ import org.jsoup.Jsoup;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
-import javax.json.Json;
-import javax.json.JsonObject;
-import javax.json.JsonReader;
+import jakarta.json.Json;
+import jakarta.json.JsonObject;
+import jakarta.json.JsonReader;
 import javax.mail.Message;
 import javax.mail.MessagingException;
 import javax.mail.Multipart;
@@ -29,6 +29,7 @@ import java.io.IOException;
 import java.io.InputStream;
 import java.io.StringReader;
 import java.io.StringWriter;
+import java.nio.charset.StandardCharsets;
 import java.nio.file.Files;
 import java.nio.file.Path;
 import java.nio.file.StandardCopyOption;
@@ -87,29 +88,34 @@ public class EmailUtil {
         try {
             // Build email headers
             HtmlEmail email = new HtmlEmail();
-            email.setCharset("UTF-8");
+            email.setCharset(StandardCharsets.UTF_8.name());
             ConfigDao configDao = new ConfigDao();
 
             // Hostname
             String envHostname = System.getenv(Constants.SMTP_HOSTNAME_ENV);
-            if (envHostname == null) {
+            if (Strings.isNullOrEmpty(envHostname)) {
                 email.setHostName(ConfigUtil.getConfigStringValue(ConfigType.SMTP_HOSTNAME));
             } else {
                 email.setHostName(envHostname);
             }
 
             // Port
+            int port = ConfigUtil.getConfigIntegerValue(ConfigType.SMTP_PORT);
             String envPort = System.getenv(Constants.SMTP_PORT_ENV);
-            if (envPort == null) {
-                email.setSmtpPort(ConfigUtil.getConfigIntegerValue(ConfigType.SMTP_PORT));
-            } else {
-                email.setSmtpPort(Integer.valueOf(envPort));
+            if (!Strings.isNullOrEmpty(envPort)) {
+                port = Integer.valueOf(envPort);
+            }
+            email.setSmtpPort(port);
+            if (port == 465) {
+                email.setSSLOnConnect(true);
+            } else if (port == 587) {
+                email.setStartTLSRequired(true);
             }
 
             // Username and password
             String envUsername = System.getenv(Constants.SMTP_USERNAME_ENV);
             String envPassword = System.getenv(Constants.SMTP_PASSWORD_ENV);
-            if (envUsername == null || envPassword == null) {
+            if (Strings.isNullOrEmpty(envUsername) || Strings.isNullOrEmpty(envPassword)) {
                 Config usernameConfig = configDao.getById(ConfigType.SMTP_USERNAME);
                 Config passwordConfig = configDao.getById(ConfigType.SMTP_PASSWORD);
                 if (usernameConfig != null && passwordConfig != null) {